{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,7]],"date-time":"2026-04-07T20:43:15Z","timestamp":1775594595169,"version":"3.50.1"},"reference-count":11,"publisher":"Oxford University Press (OUP)","issue":"17","license":[{"start":{"date-parts":[[2021,2,3]],"date-time":"2021-02-03T00:00:00Z","timestamp":1612310400000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"ANR CoNoCo","award":["ANR-18-CE12-0025"],"award-info":[{"award-number":["ANR-18-CE12-0025"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,9,9]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>Genoscapist is a tool to design web interfaces generating high-quality images for interactive visualization of hundreds of quantitative profiles along a reference genome together with various annotations. Relevance is demonstrated by deployment of two websites dedicated to large condition-dependent transcriptome datasets available for Bacillus subtilis and Staphylococcus aureus.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>Websites and source code freely accessible at https:\/\/genoscapist.migale.inrae.fr<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab079","type":"journal-article","created":{"date-parts":[[2021,1,29]],"date-time":"2021-01-29T20:12:40Z","timestamp":1611951160000},"page":"2747-2749","source":"Crossref","is-referenced-by-count":9,"title":["Genoscapist: online exploration of quantitative profiles along genomes via interactively customized graphical representations"],"prefix":"10.1093","volume":"37","author":[{"given":"Sandra","family":"D\u00e9rozier","sequence":"first","affiliation":[{"name":"Universit\u00e9 Paris-Saclay, INRAE, MaIAGE , Jouy-en-Josas 78350, France"},{"name":"Universit\u00e9 Paris-Saclay, INRAE, BioinfOmics, MIGALE Bioinformatics Facility , Jouy-en-Josas 78350, France"}]},{"given":"Pierre","family":"Nicolas","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Paris-Saclay, INRAE, MaIAGE , Jouy-en-Josas 78350, France"}]},{"given":"Ulrike","family":"M\u00e4der","sequence":"additional","affiliation":[{"name":"Interfaculty Institute for Genetics and Functional Genomics, University Medicine Greifswald , Greifswald, Germany"}]},{"given":"Cyprien","family":"Gu\u00e9rin","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Paris-Saclay, INRAE, MaIAGE , Jouy-en-Josas 78350, France"}]}],"member":"286","published-online":{"date-parts":[[2021,2,3]]},"reference":[{"key":"2023051609205230500_btab079-B1","doi-asserted-by":"crossref","first-page":"e1006909","DOI":"10.1371\/journal.pgen.1006909","article-title":"Termination factor rho: from the control of pervasive transcription to cell fate determination in Bacillus subtilis","volume":"13","author":"Bidnenko","year":"2017","journal-title":"PLoS Genet"},{"key":"2023051609205230500_btab079-B2","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1186\/s13059-016-0924-1","article-title":"JBrowse: a dynamic web platform for genome visualization and analysis","volume":"17","author":"Buels","year":"2016","journal-title":"Genome Biol"},{"key":"2023051609205230500_btab079-B3","doi-asserted-by":"crossref","first-page":"8","DOI":"10.1186\/1746-4811-7-8","article-title":"Exploration of plant genomes in the FLAGdb++ environment","volume":"7","author":"D\u00e9rozier","year":"2011","journal-title":"Plant Methods"},{"key":"2023051609205230500_btab079-B4","doi-asserted-by":"crossref","first-page":"558","DOI":"10.1016\/j.ijmm.2017.11.011","article-title":"AureoWiki\u2014the repository of the Staphylococcus aureus research and annotation community","volume":"308","author":"Fuchs","year":"2018","journal-title":"Int. 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