{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,10]],"date-time":"2026-04-10T07:59:39Z","timestamp":1775807979517,"version":"3.50.1"},"reference-count":14,"publisher":"Oxford University Press (OUP)","issue":"18","license":[{"start":{"date-parts":[[2021,2,17]],"date-time":"2021-02-17T00:00:00Z","timestamp":1613520000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100007435","name":"\u00c5ke Wiberg foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100007435","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Per-Eric and Ulla Schyberg\u2019s foundation"},{"name":"IngaBritt"},{"name":"Arne Lundberg foundation"},{"name":"Royal Physiographic Society of Lund"},{"name":"Sigurd and Elsa Goljes Memorial Foundation"},{"name":"Corbel II grant"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,9,29]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>Modern bioimaging and related areas such as sensor technology have undergone tremendous development over the last few years. As a result, contemporary imaging techniques, particularly electron microscopy (EM) and light sheet microscopy, can frequently generate datasets attaining sizes of several terabytes (TB). As a consequence, even seemingly simple data operations such as cropping, chromatic- and drift-corrections and even visualisation, poses challenges when applied to thousands of time points or tiles. To address this we developed BigDataProcessor2\u2014a Fiji plugin facilitating processing workflows for TB sized image datasets.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>BigDataProcessor2 is available as a Fiji plugin via the BigDataProcessor update site. The application is implemented in Java and the code is publicly available on GitHub (https:\/\/github.com\/bigdataprocessor\/bigdataprocessor2).<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Supplementary information<\/jats:title>\n                    <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab106","type":"journal-article","created":{"date-parts":[[2021,2,13]],"date-time":"2021-02-13T07:54:09Z","timestamp":1613202849000},"page":"3079-3081","source":"Crossref","is-referenced-by-count":20,"title":["BigDataProcessor2: a free and open-source Fiji plugin for inspection and processing of TB sized image data"],"prefix":"10.1093","volume":"37","author":[{"given":"Christian","family":"Tischer","sequence":"first","affiliation":[{"name":"Centre for Bioimage Analysis, European Molecular Biology Laboratory (EMBL) , 69117, Heidelberg, Germany"},{"name":"Advanced Light Microscopy Facility , EMBL, 69117, Heidelberg, Germany"},{"name":"Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany"}]},{"given":"Ashis","family":"Ravindran","sequence":"additional","affiliation":[{"name":"University of Heidelberg, Department of Scientific Computing , 69120, Heidelberg, Germany"}]},{"given":"Sabine","family":"Reither","sequence":"additional","affiliation":[{"name":"Advanced Light Microscopy Facility , EMBL, 69117, Heidelberg, Germany"},{"name":"Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany"}]},{"given":"Nicolas","family":"Chiaruttini","sequence":"additional","affiliation":[{"name":"BioImaging & Optics Platform (BIOP), Faculty of Life Sciences (SV), Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne , CH-1015 Lausanne, Switzerland"}]},{"given":"Rainer","family":"Pepperkok","sequence":"additional","affiliation":[{"name":"Advanced Light Microscopy Facility , EMBL, 69117, Heidelberg, Germany"},{"name":"Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-1970-3198","authenticated-orcid":false,"given":"Nils","family":"Norlin","sequence":"additional","affiliation":[{"name":"Cell Biology and Biophysics Unit, EMBL , 69117, Heidelberg, Germany"},{"name":"Department of Experimental Medical Science, 221 84, Lund University , Lund, Sweden"},{"name":"Lund University Bioimaging Centre, 222 41, Lund University , Lund, Sweden"}]}],"member":"286","published-online":{"date-parts":[[2021,2,17]]},"reference":[{"key":"2023061310542701200_btab106-B1","first-page":"9:e54066","article-title":"Tracking cells in epithelial acini by light sheet microscopy reveals proximity effects in breast cancer initiation","volume":"2020","author":"Alladin","year":"2020","journal-title":"eLife"},{"key":"2023061310542701200_btab106-B2","doi-asserted-by":"crossref","first-page":"192","DOI":"10.1038\/nmeth.3767","article-title":"TeraFly: real-time three-dimensional visualization and annotation of terabytes of multidimensional volumetric images","volume":"13","author":"Bria","year":"2016","journal-title":"Nat. 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