{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,7]],"date-time":"2026-04-07T18:51:27Z","timestamp":1775587887893,"version":"3.50.1"},"reference-count":16,"publisher":"Oxford University Press (OUP)","issue":"18","license":[{"start":{"date-parts":[[2021,2,19]],"date-time":"2021-02-19T00:00:00Z","timestamp":1613692800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"Cultivation of Guangdong College Students\u2019 Scientific and Technological Innovation"},{"name":"China Undergraduate Training Program for Innovation and Entrepreneurship","award":["202010590039"],"award-info":[{"award-number":["202010590039"]}]},{"name":"Shenzhen University Innovation Development Fund","award":["2019264"],"award-info":[{"award-number":["2019264"]}]},{"name":"Scientific and Technical Innovation Council of Shenzhen"},{"DOI":"10.13039\/501100003453","name":"Guangdong Natural Science Foundation","doi-asserted-by":"publisher","award":["KQJSCX20170727101743831"],"award-info":[{"award-number":["KQJSCX20170727101743831"]}],"id":[{"id":"10.13039\/501100003453","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100003453","name":"Guangdong Natural Science Foundation","doi-asserted-by":"publisher","award":["2020A1515011117"],"award-info":[{"award-number":["2020A1515011117"]}],"id":[{"id":"10.13039\/501100003453","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,9,29]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>MitoFlex is a linux-based mitochondrial genome analysis toolkit, which provides a complete workflow of raw data filtering, de novo assembly, mitochondrial genome identification and annotation for animal High Throughput Sequencing data. The overall performance was compared between MitoFlex and its analogue MitoZ, in terms of protein-coding gene recovery, memory consumption and processing speed.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availabilityand implementation<\/jats:title>\n                  <jats:p>MitoFlex is available at https:\/\/github.com\/Prunoideae\/MitoFlex under GPLv3 license.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab111","type":"journal-article","created":{"date-parts":[[2021,2,16]],"date-time":"2021-02-16T21:32:16Z","timestamp":1613511136000},"page":"3001-3003","source":"Crossref","is-referenced-by-count":20,"title":["MitoFlex: an efficient, high-performance toolkit for animal mitogenome assembly, annotation and visualization"],"prefix":"10.1093","volume":"37","author":[{"given":"Jun-Yu","family":"Li","sequence":"first","affiliation":[{"name":"Shenzhen Key Laboratory of Marine Bioresource and Eco-environmental Science, Guangdong Engineering Research Center for Marine Algal Biotechnology, College of Life Sciences and Oceanography, Shenzhen University , Shenzhen 518060, PR China"}]},{"given":"Wei-Xuan","family":"Li","sequence":"additional","affiliation":[{"name":"Shenzhen Key Laboratory of Marine Bioresource and Eco-environmental Science, Guangdong Engineering Research Center for Marine Algal Biotechnology, College of Life Sciences and Oceanography, Shenzhen University , Shenzhen 518060, PR China"}]},{"given":"An-Tai","family":"Wang","sequence":"additional","affiliation":[{"name":"Shenzhen Key Laboratory of Marine Bioresource and Eco-environmental Science, Guangdong Engineering Research Center for Marine Algal Biotechnology, College of Life Sciences and Oceanography, Shenzhen University , Shenzhen 518060, PR China"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7378-6946","authenticated-orcid":false,"given":"Yu","family":"Zhang","sequence":"additional","affiliation":[{"name":"Shenzhen Key Laboratory of Marine Bioresource and Eco-environmental Science, Guangdong Engineering Research Center for Marine Algal Biotechnology, College of Life Sciences and Oceanography, Shenzhen University , Shenzhen 518060, PR China"}]}],"member":"286","published-online":{"date-parts":[[2021,2,19]]},"reference":[{"key":"2023061310540115300_btab111-B2","doi-asserted-by":"crossref","first-page":"313","DOI":"10.1016\/j.ympev.2012.08.023","article-title":"MITOS: improved de novo metazoan mitochondrial genome annotation","volume":"69","author":"Bernt","year":"2013","journal-title":"Mol. 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