{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:34:04Z","timestamp":1772138044379,"version":"3.50.1"},"reference-count":22,"publisher":"Oxford University Press (OUP)","issue":"18","license":[{"start":{"date-parts":[[2021,3,8]],"date-time":"2021-03-08T00:00:00Z","timestamp":1615161600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100002347","name":"Bundesministerium f\u00fcr Bildung und Forschung","doi-asserted-by":"publisher","award":["031L0142A"],"award-info":[{"award-number":["031L0142A"]}],"id":[{"id":"10.13039\/501100002347","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100002347","name":"Bundesministerium f\u00fcr Bildung und Forschung","doi-asserted-by":"publisher","award":["16GW0191"],"award-info":[{"award-number":["16GW0191"]}],"id":[{"id":"10.13039\/501100002347","id-type":"DOI","asserted-by":"publisher"}]},{"name":"NUM-COVID 19 \u2013 Organo-Strat","award":["01KX2021"],"award-info":[{"award-number":["01KX2021"]}]},{"DOI":"10.13039\/100004412","name":"HFSP","doi-asserted-by":"publisher","award":["RGP0021\/2018-102"],"award-info":[{"award-number":["RGP0021\/2018-102"]}],"id":[{"id":"10.13039\/100004412","id-type":"DOI","asserted-by":"publisher"}]},{"name":"BEPE","award":["2019\/06305-4"],"award-info":[{"award-number":["2019\/06305-4"]}]},{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["INST 335\/591-1"],"award-info":[{"award-number":["INST 335\/591-1"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,9,29]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>Here, we propose Fourier ring correlation-based quality estimation (FRC-QE) as a new metric for automated image quality estimation in 3D fluorescence microscopy acquisitions of cleared organoids that yields comparable measurements across experimental replicates, clearing protocols and works for different microscopy modalities.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>FRC-QE is written in ImgLib2\/Java and provided as an easy-to-use and macro-scriptable plugin for Fiji. Code, documentation, sample images and further information can be found under https:\/\/github.com\/PreibischLab\/FRC-QE.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Supplementary information<\/jats:title>\n                    <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab160","type":"journal-article","created":{"date-parts":[[2021,3,4]],"date-time":"2021-03-04T07:13:12Z","timestamp":1614841992000},"page":"3088-3090","source":"Crossref","is-referenced-by-count":14,"title":["FRC-QE: a robust and comparable 3D microscopy image quality metric for cleared organoids"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-8231-2195","authenticated-orcid":false,"given":"Friedrich","family":"Preusser","sequence":"first","affiliation":[{"name":"Berlin Institute for Medical Systems Biology (BIMSB), Max Delbr\u00fcck Center for Molecular Medicine in the Helmholtz Association (MDC) , Berlin 10115, Germany"}]},{"given":"Nat\u00e1lia","family":"dos Santos","sequence":"additional","affiliation":[{"name":"Molecular Oncology Center, Hospital Sirio-Libanese , S\u00e3o Paulo, SP 01308-050, Brazil"}]},{"given":"J\u00f6rg","family":"Contzen","sequence":"additional","affiliation":[{"name":"Department of Experimental Neurology, Center for Stroke Research Berlin, Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin , Berlin 10117, Germany"}]},{"given":"Harald","family":"Stachelscheid","sequence":"additional","affiliation":[{"name":"Stem Cell Core Facility, Berlin Institute of Health at Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin , Berlin 13353, Germany"}]},{"given":"\u00c9rico Tosoni","family":"Costa","sequence":"additional","affiliation":[{"name":"Molecular Oncology Center, Hospital Sirio-Libanese , S\u00e3o Paulo, SP 01308-050, Brazil"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9753-6711","authenticated-orcid":false,"given":"Philipp","family":"Mergenthaler","sequence":"additional","affiliation":[{"name":"Department of Experimental Neurology, Center for Stroke Research Berlin, Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin , Berlin 10117, Germany"},{"name":"Department of Neurology, Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin , Berlin 10117, Germany"},{"name":"BIH Academy, Berlin Institute of Health at Charit\u00e9 \u2013Universit\u00e4tsmedizin Berlin , Berlin 10117, Germany"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0276-494X","authenticated-orcid":false,"given":"Stephan","family":"Preibisch","sequence":"additional","affiliation":[{"name":"Berlin Institute for Medical Systems Biology (BIMSB), Max Delbr\u00fcck Center for Molecular Medicine in the Helmholtz Association (MDC) , Berlin 10115, Germany"},{"name":"Janelia Research Campus, Howard Hughes Medical Institute , Ashburn, VA 20147, USA"}]}],"member":"286","published-online":{"date-parts":[[2021,3,8]]},"reference":[{"key":"2023061310561027300_btab160-B1","doi-asserted-by":"crossref","first-page":"363","DOI":"10.1016\/j.jsb.2013.05.004","article-title":"Fourier ring correlation as a resolution criterion for super-resolution microscopy","volume":"183","author":"Banterle","year":"2013","journal-title":"J. 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