{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,19]],"date-time":"2026-04-19T08:43:38Z","timestamp":1776588218944,"version":"3.51.2"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"18","license":[{"start":{"date-parts":[[2021,3,14]],"date-time":"2021-03-14T00:00:00Z","timestamp":1615680000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["DBI-2051595"],"award-info":[{"award-number":["DBI-2051595"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["DBI-1902076"],"award-info":[{"award-number":["DBI-1902076"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100010346","name":"University of Colorado Denver","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100010346","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,9,29]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>The need for an efficient and cost-effective method is compelling in biomolecular NMR. To tackle this problem, we have developed the Poky suite, the revolutionized platform with boundless possibilities for advancing research and technology development in signal detection, resonance assignment, structure calculation and relaxation studies with the help of many automation and user interface tools. This software is extensible and scalable by scripting and batching as well as providing modern graphical user interfaces and a diverse range of modules right out of the box.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>Poky is freely available to non-commercial users at https:\/\/poky.clas.ucdenver.edu.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab180","type":"journal-article","created":{"date-parts":[[2021,3,12]],"date-time":"2021-03-12T20:11:24Z","timestamp":1615579884000},"page":"3041-3042","source":"Crossref","is-referenced-by-count":218,"title":["POKY: a software suite for multidimensional NMR and 3D structure calculation of biomolecules"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-0964-203X","authenticated-orcid":false,"given":"Woonghee","family":"Lee","sequence":"first","affiliation":[{"name":"Department of Chemistry, University of Colorado Denver , Denver, CO 80204, USA"}]},{"given":"Mehdi","family":"Rahimi","sequence":"additional","affiliation":[{"name":"Department of Chemistry, University of Colorado Denver , Denver, CO 80204, USA"}]},{"given":"Yeongjoon","family":"Lee","sequence":"additional","affiliation":[{"name":"Department of Chemistry, University of Colorado Denver , Denver, CO 80204, USA"}]},{"given":"Abigail","family":"Chiu","sequence":"additional","affiliation":[{"name":"Department of Chemistry, University of Colorado Denver , Denver, CO 80204, USA"}]}],"member":"286","published-online":{"date-parts":[[2021,3,14]]},"reference":[{"key":"2023061310563571800_btab180-B1","doi-asserted-by":"crossref","first-page":"277","DOI":"10.1007\/BF00197809","article-title":"NMRPipe: a multidimensional spectral processing system based on UNIX pipes","volume":"6","author":"Delaglio","year":"1995","journal-title":"J. Biomol. NMR"},{"key":"2023061310563571800_btab180-B2","doi-asserted-by":"crossref","first-page":"577","DOI":"10.1007\/s10858-019-00265-1","article-title":"Using deep neural networks to reconstruct non-uniformly sampled NMR spectra","volume":"73","author":"Hansen","year":"2019","journal-title":"J. Biomol. NMR"},{"key":"2023061310563571800_btab180-B3","first-page":"313","article-title":"Using NMRView to visualize and analyze the NMR spectra of macromolecules","volume":"278","author":"Johnson","year":"2004","journal-title":"Methods Mol. Biol. Clifton NJ"},{"key":"2023061310563571800_btab180-B4","doi-asserted-by":"crossref","first-page":"2590","DOI":"10.1093\/bioinformatics\/bty134","article-title":"NMRNet: a deep learning approach to automated peak picking of protein NMR spectra","volume":"34","author":"Klukowski","year":"2018","journal-title":"Bioinformatics"},{"key":"2023061310563571800_btab180-B5","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1007\/s10858-016-0029-x","article-title":"Integrative NMR for biomolecular research","volume":"64","author":"Lee","year":"2016","journal-title":"J. Biomol. NMR"},{"key":"2023061310563571800_btab180-B6","doi-asserted-by":"crossref","first-page":"213","DOI":"10.1007\/s10858-019-00255-3","article-title":"I-PINE web server: an integrative probabilistic NMR assignment system for proteins","volume":"73","author":"Lee","year":"2019","journal-title":"J. Biomol. NMR"},{"key":"2023061310563571800_btab180-B7","doi-asserted-by":"crossref","first-page":"1586","DOI":"10.1093\/bioinformatics\/btx785","article-title":"PINE-SPARKY.2 for automated NMR-based protein structure research","volume":"34","author":"Lee","year":"2018","journal-title":"Bioinformatics"},{"key":"2023061310563571800_btab180-B8","doi-asserted-by":"crossref","first-page":"73","DOI":"10.1007\/s10858-014-9855-x","article-title":"PONDEROSA-C\/S: client-server based software package for automated protein 3D structure determination","volume":"60","author":"Lee","year":"2014","journal-title":"J. Biomol. NMR"},{"key":"2023061310563571800_btab180-B9","first-page":"btaa781","article-title":"CHESPA\/CHESCA-SPARKY: automated NMR data analysis plugins for SPARKY to map protein allostery","author":"Shao","year":"2020","journal-title":"Bioinformatics"},{"key":"2023061310563571800_btab180-B10","doi-asserted-by":"crossref","first-page":"2915","DOI":"10.1093\/bioinformatics\/btaa019","article-title":"PISA-SPARKY: an interactive SPARKY plugin to analyze oriented solid-state NMR spectra of helical membrane proteins","volume":"36","author":"Weber","year":"2020","journal-title":"Bioinformatics"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"http:\/\/academic.oup.com\/bioinformatics\/advance-article-pdf\/doi\/10.1093\/bioinformatics\/btab180\/38499311\/btab180.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/37\/18\/3041\/50579433\/btab180.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/37\/18\/3041\/50579433\/btab180.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,6,13]],"date-time":"2023-06-13T10:58:35Z","timestamp":1686653915000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/37\/18\/3041\/6170655"}},"subtitle":[],"editor":[{"given":"Jan","family":"Gorodkin","sequence":"additional","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2021,3,14]]},"references-count":10,"journal-issue":{"issue":"18","published-print":{"date-parts":[[2021,9,29]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btab180","relation":{},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"value":"1367-4803","type":"print"},{"value":"1367-4811","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2021,9,15]]},"published":{"date-parts":[[2021,3,14]]}}}