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It extracts all possible protein fragments from each contig, quickly retains those that can contribute to taxonomic annotation, assigns them with robust labels and determines the contig\u2019s taxonomic identity by weighted voting. Its fragment extraction step is suitable for the analysis of all domains of life. MMseqs2 taxonomy is 2\u201318\u00d7 faster than state-of-the-art tools and also contains new modules for creating and manipulating taxonomic reference databases as well as reporting and visualizing taxonomic assignments.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>MMseqs2 taxonomy is part of the MMseqs2 free open-source software package available for Linux, macOS and Windows at https:\/\/mmseqs.com.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Supplementary information<\/jats:title>\n                    <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab184","type":"journal-article","created":{"date-parts":[[2021,3,16]],"date-time":"2021-03-16T16:45:36Z","timestamp":1615913136000},"page":"3029-3031","source":"Crossref","is-referenced-by-count":266,"title":["Fast and sensitive taxonomic assignment to metagenomic contigs"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-8637-6719","authenticated-orcid":false,"given":"M","family":"Mirdita","sequence":"first","affiliation":[{"name":"Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry , G\u00f6ttingen, Germany"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8781-9753","authenticated-orcid":false,"given":"M","family":"Steinegger","sequence":"additional","affiliation":[{"name":"School of Biological Sciences, Seoul National University , Seoul, South Korea"},{"name":"Institute of Molecular Biology and Genetics, Seoul National University , Seoul, South Korea"},{"name":"Artificial Intelligence Institute, Seoul National University , Seoul, South Korea"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6192-0853","authenticated-orcid":false,"given":"F","family":"Breitwieser","sequence":"additional","affiliation":[{"name":"Center for Computational Biology, McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins School of Medicine , Baltimore, MD 21205, USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9642-8244","authenticated-orcid":false,"given":"J","family":"S\u00f6ding","sequence":"additional","affiliation":[{"name":"Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry , G\u00f6ttingen, Germany"},{"name":"Campus-Institut Data Science (CIDAS) , G\u00f6ttingen, Germany"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5045-0857","authenticated-orcid":false,"given":"E","family":"Levy Karin","sequence":"additional","affiliation":[{"name":"Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry , G\u00f6ttingen, Germany"}]}],"member":"286","published-online":{"date-parts":[[2021,3,18]]},"reference":[{"key":"2023061310573196200_btab184-B1","doi-asserted-by":"crossref","first-page":"D8","DOI":"10.1093\/nar\/gkx1095","article-title":"Database resources of the National Center for Biotechnology Information","volume":"46","author":"Agarwala","year":"2018","journal-title":"Nucleic Acids Res"},{"key":"2023061310573196200_btab184-B2","doi-asserted-by":"crossref","first-page":"D506","DOI":"10.1093\/nar\/gky1049","article-title":"UniProt: a worldwide hub of protein knowledge","volume":"47","author":"Bateman","year":"2019","journal-title":"Nucleic Acids Res"},{"key":"2023061310573196200_btab184-B3","doi-asserted-by":"crossref","first-page":"59","DOI":"10.1038\/nmeth.3176","article-title":"Fast and sensitive protein alignment using DIAMOND","volume":"12","author":"Buchfink","year":"2015","journal-title":"Nat. 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