{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,2]],"date-time":"2026-06-02T12:53:16Z","timestamp":1780404796685,"version":"3.54.1"},"reference-count":15,"publisher":"Oxford University Press (OUP)","issue":"20","license":[{"start":{"date-parts":[[2021,4,26]],"date-time":"2021-04-26T00:00:00Z","timestamp":1619395200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"BioInfoRx, Inc"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,10,25]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>We developed Quickomics, a feature-rich R Shiny-powered tool to enable biologists to fully explore complex omics statistical analysis results and perform advanced analysis in an easy-to-use interactive interface. It covers a broad range of secondary and tertiary analytical tasks after primary analysis of omics data is completed. Each functional module is equipped with customizable options and generates both interactive and publication-ready plots to uncover biological insights from data. The modular design makes the tool extensible with ease.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>Researchers can experience the functionalities with their own data or demo RNA-Seq and proteomics datasets by using the app hosted at http:\/\/quickomics.bxgenomics.com and following the tutorial, https:\/\/bit.ly\/3rXIyhL. The source code under GPLv3 license is provided at https:\/\/github.com\/interactivereport\/Quickomics for local installation.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Supplementary information<\/jats:title>\n                    <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab255","type":"journal-article","created":{"date-parts":[[2021,4,19]],"date-time":"2021-04-19T23:30:32Z","timestamp":1618875032000},"page":"3670-3672","source":"Crossref","is-referenced-by-count":17,"title":["Quickomics: exploring omics data in an intuitive, interactive and informative manner"],"prefix":"10.1093","volume":"37","author":[{"given":"Benbo","family":"Gao","sequence":"first","affiliation":[{"name":"Research and Development, Biogen Inc , Cambridge, MA 02142, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9039-6533","authenticated-orcid":false,"given":"Jing","family":"Zhu","sequence":"additional","affiliation":[{"name":"Research and Development, Biogen Inc , Cambridge, MA 02142, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Soumya","family":"Negi","sequence":"additional","affiliation":[{"name":"Research and Development, Biogen Inc , Cambridge, MA 02142, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Xinmin","family":"Zhang","sequence":"additional","affiliation":[{"name":"Data Science, BioInfoRx Inc , Madison, WI 53719, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Stefka","family":"Gyoneva","sequence":"additional","affiliation":[{"name":"Research and Development, Biogen Inc , Cambridge, MA 02142, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6781-8670","authenticated-orcid":false,"given":"Fergal","family":"Casey","sequence":"additional","affiliation":[{"name":"Research and Development, Biogen Inc , Cambridge, MA 02142, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ru","family":"Wei","sequence":"additional","affiliation":[{"name":"Research and Development, Biogen Inc , Cambridge, MA 02142, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4735-4212","authenticated-orcid":false,"given":"Baohong","family":"Zhang","sequence":"additional","affiliation":[{"name":"Research and Development, Biogen Inc , Cambridge, MA 02142, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2021,4,26]]},"reference":[{"key":"2023051608575297100_btab255-B1","doi-asserted-by":"crossref","first-page":"512","DOI":"10.1016\/j.nbd.2019.04.005","article-title":"An integrated transcriptomics and proteomics analysis reveals functional endocytic dysregulation caused by mutations in LRRK2","volume":"127","author":"Connor-Robson","year":"2019","journal-title":"Neurobiol. 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