{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:34:06Z","timestamp":1772138046849,"version":"3.50.1"},"reference-count":31,"publisher":"Oxford University Press (OUP)","issue":"20","license":[{"start":{"date-parts":[[2021,5,12]],"date-time":"2021-05-12T00:00:00Z","timestamp":1620777600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004359","name":"Swedish Research Council","doi-asserted-by":"publisher","award":["542-2014-2348"],"award-info":[{"award-number":["542-2014-2348"]}],"id":[{"id":"10.13039\/501100004359","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,10,25]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>Functional analysis has become a common approach to incorporate biological knowledge into the analysis of omics data, and to explore molecular events that govern a disease state. It is though only one step in a wider analytical pipeline that typically requires use of multiple individual analysis software. There is currently a need for a well-integrated omics analysis tool that performs all the steps. The ProteoMill portal is developed as an R Shiny application and integrates all necessary steps from data-upload, converting identifiers, to quality control, differential expression and network-based functional analysis into a single fast, interactive easy to use workflow. Further, it maintains annotation data sources up to date, overcoming a common problem with use of outdated information and seamlessly integrates multiple R-packages for an improved user-experience. The functionality provided in this software can benefit researchers by facilitating the exploratory analysis of proteomics data.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>ProteoMill is available at https:\/\/proteomill.com.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab373","type":"journal-article","created":{"date-parts":[[2021,5,11]],"date-time":"2021-05-11T10:31:46Z","timestamp":1620729106000},"page":"3491-3493","source":"Crossref","is-referenced-by-count":3,"title":["ProteoMill: efficient network-based functional analysis portal for proteomics data"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-6968-4314","authenticated-orcid":false,"given":"Martin","family":"Ryd\u00e9n","sequence":"first","affiliation":[{"name":"Department of Clinical Sciences Lund, Orthopedics, Clinical Epidemiology Unit, Lund University , SE-22185 Lund, Sweden"}]},{"given":"Martin","family":"Englund","sequence":"additional","affiliation":[{"name":"Department of Clinical Sciences Lund, Orthopedics, Clinical Epidemiology Unit, Lund University , SE-22185 Lund, Sweden"}]},{"given":"Neserin","family":"Ali","sequence":"additional","affiliation":[{"name":"Department of Clinical Sciences Lund, Rheumatology and Molecular Skeletal Biology, Lund University , SE-22184 Lund, Sweden"}]}],"member":"286","published-online":{"date-parts":[[2021,5,12]]},"reference":[{"key":"2023051609042635600_btab373-B1","author":"Allaire","year":"2017"},{"key":"2023051609042635600_btab373-B2","author":"Almende","year":"2019"},{"key":"2023051609042635600_btab373-B3","doi-asserted-by":"crossref","first-page":"6","DOI":"10.1038\/s41562-017-0189-z","article-title":"Redefine statistical significance","volume":"2","author":"Benjamin","year":"2018","journal-title":"Nat. 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