{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,7]],"date-time":"2026-02-07T19:29:22Z","timestamp":1770492562796,"version":"3.49.0"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"24","license":[{"start":{"date-parts":[[2021,6,21]],"date-time":"2021-06-21T00:00:00Z","timestamp":1624233600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["261193037"],"award-info":[{"award-number":["261193037"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001659","name":"Deutsche Forschungsgemeinschaft","doi-asserted-by":"publisher","award":["391371888"],"award-info":[{"award-number":["391371888"]}],"id":[{"id":"10.13039\/501100001659","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,12,11]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>Creating 3D animations from microscopy data is computationally expensive and requires high-end hardware. We therefore developed 3Dscript.server, a 3D animation software that runs as a service on dedicated, shared workstations. Using 3Dscript as the underlying rendering engine, it offers unique features not found in existing software: rendering is performed completely server-side. The target animation is specified on the client without the rendering engine, eliminating any hardware requirements client-side. Still, defining an animation is intuitive due to 3Dscript\u2019s natural language-based animation description. We implemented a new OMERO web app to utilize 3Dscript.server directly from the OMERO web interface; a Fiji client to use 3Dscript.server from Fiji for integration into image processing pipelines; and batch scripts to run 3Dscript.server on compute clusters for large-scale visualization projects.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>Source code and documentation is available at https:\/\/github.com\/bene51\/omero_3Dscript, https:\/\/github.com\/bene51\/3Dscript.server and https:\/\/github.com\/bene51\/3Dscript.cluster.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab462","type":"journal-article","created":{"date-parts":[[2021,6,17]],"date-time":"2021-06-17T11:12:13Z","timestamp":1623928333000},"page":"4901-4902","source":"Crossref","is-referenced-by-count":4,"title":["3Dscript.server: true server-side 3D animation of microscopy images using a natural language-based syntax"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-9327-2296","authenticated-orcid":false,"given":"Benjamin","family":"Schmid","sequence":"first","affiliation":[{"name":"Optical Imaging Centre Erlangen, University of Erlangen-Nuremberg , 91058 Erlangen, Germany"}]},{"given":"Philipp","family":"Tripal","sequence":"additional","affiliation":[{"name":"Optical Imaging Centre Erlangen, University of Erlangen-Nuremberg , 91058 Erlangen, Germany"}]},{"given":"Zolt\u00e1n","family":"Winter","sequence":"additional","affiliation":[{"name":"Optical Imaging Centre Erlangen, University of Erlangen-Nuremberg , 91058 Erlangen, Germany"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4283-2115","authenticated-orcid":false,"given":"Ralph","family":"Palmisano","sequence":"additional","affiliation":[{"name":"Optical Imaging Centre Erlangen, University of Erlangen-Nuremberg , 91058 Erlangen, Germany"}]}],"member":"286","published-online":{"date-parts":[[2021,6,21]]},"reference":[{"key":"2023051607133141800_btab462-B1","doi-asserted-by":"crossref","first-page":"245","DOI":"10.1038\/nmeth.1896","article-title":"OMERO: flexible, model-driven data management for experimental biology","volume":"9","author":"Allan","year":"2012","journal-title":"Nat. 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