{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:34:09Z","timestamp":1772138049263,"version":"3.50.1"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"23","license":[{"start":{"date-parts":[[2021,10,8]],"date-time":"2021-10-08T00:00:00Z","timestamp":1633651200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"RCV GmbH & Co KG"},{"DOI":"10.13039\/501100013699","name":"Austrian Federal Ministry of Education, Science and Research","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100013699","id-type":"DOI","asserted-by":"publisher"}]},{"name":"State of Upper Austria","award":["LIT-2019-7-SEE-117"],"award-info":[{"award-number":["LIT-2019-7-SEE-117"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,12,7]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>A main task in computational cancer analysis is the identification of patient subgroups (i.e. cohorts) based on metadata attributes (patient stratification) or genomic markers of response (biomarkers). Coral is a web-based cohort analysis tool that is designed to support this task: Users can interactively create and refine cohorts, which can then be compared, characterized and inspected down to the level of single items. Coral visualizes the evolution of cohorts and also provides intuitive access to prevalence information. Furthermore, findings can be stored, shared and reproduced via the integrated session management. Coral is pre-loaded with data from over 128\u00a0000 samples from the AACR Project GENIE, the Cancer Genome Atlas and the Cell Line Encyclopedia.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>Coral is publicly available at https:\/\/coral.caleydoapp.org. The source code is released at https:\/\/github.com\/Caleydo\/coral.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Supplementary information<\/jats:title>\n                    <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab695","type":"journal-article","created":{"date-parts":[[2021,10,7]],"date-time":"2021-10-07T21:09:48Z","timestamp":1633640988000},"page":"4559-4561","source":"Crossref","is-referenced-by-count":5,"title":["Coral: a web-based visual analysis tool for creating and characterizing cohorts"],"prefix":"10.1093","volume":"37","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1819-5929","authenticated-orcid":false,"given":"Patrick","family":"Adelberger","sequence":"first","affiliation":[{"name":"Institute of Computer Graphics, Johannes Kepler University Linz , A-4040 Linz, Austria"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-6832-9070","authenticated-orcid":false,"given":"Klaus","family":"Eckelt","sequence":"additional","affiliation":[{"name":"Institute of Computer Graphics, Johannes Kepler University Linz , A-4040 Linz, Austria"}]},{"given":"Markus J","family":"Bauer","sequence":"additional","affiliation":[{"name":"Global Computational Biology and Digital Sciences, Boehringer Ingelheim RCV GmbH & Co KG , A-1121 Vienna, Austria"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9186-2092","authenticated-orcid":false,"given":"Marc","family":"Streit","sequence":"additional","affiliation":[{"name":"Institute of Computer Graphics, Johannes Kepler University Linz , A-4040 Linz, Austria"}]},{"given":"Christian","family":"Haslinger","sequence":"additional","affiliation":[{"name":"Global Computational Biology and Digital Sciences, Boehringer Ingelheim RCV GmbH & Co KG , A-1121 Vienna, Austria"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-9848-7598","authenticated-orcid":false,"given":"Thomas","family":"Zichner","sequence":"additional","affiliation":[{"name":"Global Computational Biology and Digital Sciences, Boehringer Ingelheim RCV GmbH & Co KG , A-1121 Vienna, Austria"}]}],"member":"286","published-online":{"date-parts":[[2021,10,8]]},"reference":[{"key":"2023061310541113000_btab695-B1","doi-asserted-by":"crossref","first-page":"818","DOI":"10.1158\/2159-8290.CD-17-0151","article-title":"AACR Project GENIE: powering precision medicine through an international consortium","volume":"7","year":"2017","journal-title":"Cancer Discov"},{"key":"2023061310541113000_btab695-B2","doi-asserted-by":"crossref","first-page":"603","DOI":"10.1038\/nature11003","article-title":"The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity","volume":"483","author":"Barretina","year":"2012","journal-title":"Nature"},{"key":"2023061310541113000_btab695-B3","doi-asserted-by":"crossref","first-page":"401","DOI":"10.1158\/2159-8290.CD-12-0095","article-title":"The cBio Cancer Genomics Portal: an open platform for exploring multidimensional cancer genomics data","volume":"2","author":"Cerami","year":"2012","journal-title":"Cancer Discov"},{"key":"2023061310541113000_btab695-B4","first-page":"7","author":"Eckelt","year":"2019"},{"key":"2023061310541113000_btab695-B5","doi-asserted-by":"crossref","first-page":"114","DOI":"10.1177\/1473871619878085","article-title":"Taggle: combining overview and details in tabular data visualizations","volume":"19","author":"Furmanova","year":"2020","journal-title":"Inf. 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