{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,4,11]],"date-time":"2025-04-11T12:46:47Z","timestamp":1744375607925,"version":"3.37.3"},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"23","license":[{"start":{"date-parts":[[2021,10,8]],"date-time":"2021-10-08T00:00:00Z","timestamp":1633651200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Wellcome Principal Research Fellow","award":["095021","200885"],"award-info":[{"award-number":["095021","200885"]}]},{"DOI":"10.13039\/100004440","name":"Wellcome","doi-asserted-by":"publisher","award":["203149"],"award-info":[{"award-number":["203149"]}],"id":[{"id":"10.13039\/100004440","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"grants-in-aid for Scientific Research","doi-asserted-by":"publisher","award":["20H00460"],"award-info":[{"award-number":["20H00460"]}],"id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100001691","name":"Japan Society for the Promotion of Science","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100001691","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Astellas Foundation for Research on Metabolic Disorders and Suntory Rising Stars Encouragement Program in Life Sciences"},{"DOI":"10.13039\/100002491","name":"Bristol Myers Squibb","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100002491","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2021,12,7]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Motivation<\/jats:title>\n                  <jats:p>Deciphering nucleosome\u2013nucleosome interactions is an important step toward mesoscale description of chromatin organization but computational tools to perform such analyses are not publicly available.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Results<\/jats:title>\n                  <jats:p>We developed iNucs, a user-friendly and efficient Python-based bioinformatics tool to compute and visualize nucleosome-resolved interactions using standard pairs format input generated from pairtools.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availabilityand implementation<\/jats:title>\n                  <jats:p>https:\/\/github.com\/Karimi-Lab\/inucs\/.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               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School of Cancer & Pharmaceutical Sciences, Faculty of Life Sciences & Medicine, King\u2019s College London , London SE5 8AF, UK"}]},{"given":"Masae","family":"Ohno","sequence":"additional","affiliation":[{"name":"Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University, Yoshida-Honmachi , Sakyo-ku, Kyoto 606-8501, Japan"},{"name":"Laboratory for Cell Systems Control, RIKEN Center for Biosystems Dynamics Research , Suita, Osaka 565-0874, Japan"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-5677-8901","authenticated-orcid":false,"given":"Yuichi","family":"Taniguchi","sequence":"additional","affiliation":[{"name":"Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University, Yoshida-Honmachi , Sakyo-ku, Kyoto 606-8501, Japan"},{"name":"Laboratory for Cell Systems Control, RIKEN Center for Biosystems Dynamics Research , Suita, Osaka 565-0874, Japan"}]},{"given":"Sunil","family":"Nahata","sequence":"additional","affiliation":[{"name":"Institute for Advanced 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