{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,6,26]],"date-time":"2025-06-26T15:45:23Z","timestamp":1750952723555,"version":"3.37.3"},"reference-count":11,"publisher":"Oxford University Press (OUP)","issue":"4","license":[{"start":{"date-parts":[[2021,11,12]],"date-time":"2021-11-12T00:00:00Z","timestamp":1636675200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"European Union\u2019s Horizon 2020 Research and Innovation Program","award":["778247","823886","952335"],"award-info":[{"award-number":["778247","823886","952335"]}]},{"name":"Italian Ministry of University and Research","award":["2017483NH8"],"award-info":[{"award-number":["2017483NH8"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,1,27]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:sec><jats:title>Summary<\/jats:title><jats:p>Biological data is ever-increasing in amount and complexity. The mapping of this data to biological entities such as nucleotide and amino acid sequences supports biological data analysis, classification and prediction. Sequence alignments and comparison allow the transfer of knowledge to evolutionary-related entities, the mapping of functional domains, the identification of binding and modification sites. To support these types of studies, we developed ProSeqViewer, a tool to visualize annotation on single sequences and multiple sequence alignments. This state-of-the-art multifunctional library was developed as a modular component to be integrated into static or dynamic web resources and support intuitive visualization of sequence features. ProseSeqViewer is extremely lightweight, fast, interactive, dynamic, responsive and works at any screen size. It generates pure HTML which is compatible with any browser and operating system. ProSeqViewer can exchange events with other visualization components and is already used by multiple biological databases.<\/jats:p><\/jats:sec><jats:sec><jats:title>Availability and implementation<\/jats:title><jats:p>ProSeqViewer is an open-source TypeScript library compatible with state-of-the-art website environments. The source code and an extensive documentation including use cases are available from the URL: https:\/\/github.com\/BioComputingUP\/ProSeqViewer.<\/jats:p><\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab764","type":"journal-article","created":{"date-parts":[[2021,11,9]],"date-time":"2021-11-09T12:22:55Z","timestamp":1636460575000},"page":"1129-1130","source":"Crossref","is-referenced-by-count":6,"title":["ProSeqViewer: an interactive, responsive and efficient TypeScript library for visualization of sequences and alignments in web applications"],"prefix":"10.1093","volume":"38","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7619-871X","authenticated-orcid":false,"given":"Martina","family":"Bevilacqua","sequence":"first","affiliation":[{"name":"Department of Biomedical Sciences, University of Padua , 35121 Padova, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-0011-9397","authenticated-orcid":false,"given":"Lisanna","family":"Paladin","sequence":"additional","affiliation":[{"name":"Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL) , 69117 Heidelberg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-4525-7793","authenticated-orcid":false,"given":"Silvio C E","family":"Tosatto","sequence":"additional","affiliation":[{"name":"Department of Biomedical Sciences, University of Padua , 35121 Padova, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8210-2390","authenticated-orcid":false,"given":"Damiano","family":"Piovesan","sequence":"additional","affiliation":[{"name":"Department of Biomedical Sciences, University of Padua , 35121 Padova, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2021,11,12]]},"reference":[{"key":"2023020108515469900_btab764-B1","doi-asserted-by":"crossref","first-page":"380","DOI":"10.1093\/bioinformatics\/14.4.380","article-title":"MView: a web-compatible database search or multiple alignment viewer","volume":"14","author":"Brown","year":"1998","journal-title":"Bioinformatics"},{"key":"2023020108515469900_btab764-B2","doi-asserted-by":"crossref","first-page":"3320","DOI":"10.1093\/nar\/gkg556","article-title":"ESPript\/ENDscript: extracting and rendering sequence and 3D information from atomic structures of proteins","volume":"31","author":"Gouet","year":"2003","journal-title":"Nucleic Acids Res"},{"key":"2023020108515469900_btab764-B3","first-page":"D269","article-title":"DisProt: intrinsic protein disorder annotation in 2020","volume":"48","author":"Hatos","year":"2020","journal-title":"Nucleic Acids Res"},{"key":"2023020108515469900_btab764-B4","doi-asserted-by":"crossref","first-page":"D412","DOI":"10.1093\/nar\/gkaa913","article-title":"Pfam: the protein families database in 2021","volume":"49","author":"Mistry","year":"2021","journal-title":"Nucleic Acids Res"},{"key":"2023020108515469900_btab764-B5","doi-asserted-by":"crossref","first-page":"D452","DOI":"10.1093\/nar\/gkaa1097","article-title":"RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures","volume":"49","author":"Paladin","year":"2021","journal-title":"Nucleic Acids Res"},{"key":"2023020108515469900_btab764-B6","doi-asserted-by":"crossref","first-page":"D361","DOI":"10.1093\/nar\/gkaa1058","article-title":"MobiDB: intrinsically disordered proteins in 2021","volume":"49","author":"Piovesan","year":"2021","journal-title":"Nucleic Acids Res"},{"key":"2023020108515469900_btab764-B7","doi-asserted-by":"crossref","first-page":"1407","DOI":"10.21105\/joss.01407","article-title":"Lexicon-mono-seq, DOM text based async MSA viewer","volume":"4","author":"Tanyalcin","year":"2019","journal-title":"J. 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