{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,3]],"date-time":"2026-07-03T18:55:22Z","timestamp":1783104922124,"version":"3.54.6"},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2021,12,14]],"date-time":"2021-12-14T00:00:00Z","timestamp":1639440000000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100004281","name":"National Science Centre","doi-asserted-by":"publisher","award":["2018\/31\/D\/NZ2\/00108"],"award-info":[{"award-number":["2018\/31\/D\/NZ2\/00108"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004281","name":"National Science Centre","doi-asserted-by":"publisher","award":["DEC-2016\/21\/D\/ST6\/02952"],"award-info":[{"award-number":["DEC-2016\/21\/D\/ST6\/02952"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100004281","name":"National Science Centre","doi-asserted-by":"publisher","award":["DEC-2019\/33\/B\/ST6\/02040"],"award-info":[{"award-number":["DEC-2019\/33\/B\/ST6\/02040"]}],"id":[{"id":"10.13039\/501100004281","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,2,7]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>Phage\u2013Host Interaction Search Tool (PHIST) predicts prokaryotic hosts of viruses based on exact matches between viral and host genomes. It improves host prediction accuracy at species level over current alignment-based tools (on average by 3 percentage points) as well as alignment-free and CRISPR-based tools (by 14\u201320 percentage points). PHIST is also two orders of magnitude faster than alignment-based tools making it suitable for metagenomics studies.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>GNU-licensed C++ code wrapped in Python API available at: https:\/\/github.com\/refresh-bio\/phist.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Supplementary information<\/jats:title>\n                    <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab837","type":"journal-article","created":{"date-parts":[[2021,12,9]],"date-time":"2021-12-09T08:14:33Z","timestamp":1639037673000},"page":"1447-1449","source":"Crossref","is-referenced-by-count":50,"title":["PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences"],"prefix":"10.1093","volume":"38","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8096-3776","authenticated-orcid":false,"given":"Andrzej","family":"Zielezinski","sequence":"first","affiliation":[{"name":"Department of Computational Biology, Adam Mickiewicz University , Poznan 61-614, Poland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9496-733X","authenticated-orcid":false,"given":"Sebastian","family":"Deorowicz","sequence":"additional","affiliation":[{"name":"Faculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology , Gliwice 44-100, Poland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-5508-0090","authenticated-orcid":false,"given":"Adam","family":"Gudy\u015b","sequence":"additional","affiliation":[{"name":"Faculty of Automatic Control, Electronics and Computer Science, Silesian University of Technology , Gliwice 44-100, Poland"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2021,12,14]]},"reference":[{"key":"2023020108560150700_btab837-B1","doi-asserted-by":"crossref","first-page":"105","DOI":"10.1038\/s41587-020-0603-3","article-title":"A unified catalog of 204,938 reference genomes from the human gut microbiome","volume":"39","author":"Almeida","year":"2021","journal-title":"Nat. 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