{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,15]],"date-time":"2026-04-15T18:15:50Z","timestamp":1776276950135,"version":"3.50.1"},"reference-count":15,"publisher":"Oxford University Press (OUP)","issue":"6","license":[{"start":{"date-parts":[[2021,12,26]],"date-time":"2021-12-26T00:00:00Z","timestamp":1640476800000},"content-version":"vor","delay-in-days":1,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"name":"Swiss National Science foundation [Special Call on Coronaviruses","award":["31CA30 196267"],"award-info":[{"award-number":["31CA30 196267"]}]},{"name":"Swiss National Science foundation [Special Call on Coronaviruses","award":["31CA30 196348"],"award-info":[{"award-number":["31CA30 196348"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,3,4]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>The CoV-Spectrum website supports the identification of new SARS-CoV-2 variants of concern and the tracking of known variants. Its flexible amino acid and nucleotide mutation search allows querying of variants before they are designated by a lineage nomenclature system. The platform brings together SARS-CoV-2 data from different sources and applies analyses. Results include the proportion of different variants over time, their demographic and geographic distributions, common mutations, hospitalization and mortality probabilities, estimates for transmission fitness advantage and insights obtained from wastewater samples.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>CoV-Spectrum is available at https:\/\/cov-spectrum.org. The code is released under the GPL-3.0 license at https:\/\/github.com\/cevo-public\/cov-spectrum-website.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btab856","type":"journal-article","created":{"date-parts":[[2021,12,21]],"date-time":"2021-12-21T20:16:49Z","timestamp":1640117809000},"page":"1735-1737","source":"Crossref","is-referenced-by-count":328,"title":["CoV-Spectrum: analysis of globally shared SARS-CoV-2 data to identify and characterize new variants"],"prefix":"10.1093","volume":"38","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-8763-2937","authenticated-orcid":false,"given":"Chaoran","family":"Chen","sequence":"first","affiliation":[{"name":"Department of Biosystems Science and Engineering, ETH Z\u00fcrich , CH-4058 Basel, Switzerland"},{"name":"Swiss Institute of Bioinformatics , CH-1015 Lausanne, Switzerland"}]},{"given":"Sarah","family":"Nadeau","sequence":"additional","affiliation":[{"name":"Department of Biosystems Science and Engineering, ETH Z\u00fcrich , CH-4058 Basel, Switzerland"},{"name":"Swiss Institute of Bioinformatics , CH-1015 Lausanne, Switzerland"}]},{"given":"Michael","family":"Yared","sequence":"additional","affiliation":[{"name":"Department of Computer Science, ETH Z\u00fcrich , CH-8092 Z\u00fcrich, Switzerland"}]},{"given":"Philippe","family":"Voinov","sequence":"additional","affiliation":[{"name":"Department of Computer Science, ETH Z\u00fcrich , CH-8092 Z\u00fcrich, Switzerland"}]},{"given":"Ning","family":"Xie","sequence":"additional","affiliation":[{"name":"Department of Informatics, University of Zurich , CH-8050 Z\u00fcrich, Switzerland"}]},{"given":"Cornelius","family":"Roemer","sequence":"additional","affiliation":[{"name":"Swiss Institute of Bioinformatics , CH-1015 Lausanne, Switzerland"},{"name":"Biozentrum, University of Basel , CH-4056 Basel, Switzerland"}]},{"given":"Tanja","family":"Stadler","sequence":"additional","affiliation":[{"name":"Department of Biosystems Science and Engineering, ETH Z\u00fcrich , CH-4058 Basel, Switzerland"},{"name":"Swiss Institute of Bioinformatics , CH-1015 Lausanne, Switzerland"}]}],"member":"286","published-online":{"date-parts":[[2021,12,25]]},"reference":[{"key":"2023020108573109000_btab856-B1","doi-asserted-by":"crossref","first-page":"3773","DOI":"10.21105\/joss.03773","article-title":"Nextclade: clade assignment, mutation calling and quality control for viral genomes","volume":"6","author":"Aksamentov","year":"2021","journal-title":"J. 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