{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,29]],"date-time":"2025-10-29T13:46:21Z","timestamp":1761745581564,"version":"3.37.3"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"7","license":[{"start":{"date-parts":[[2022,1,10]],"date-time":"2022-01-10T00:00:00Z","timestamp":1641772800000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/academic.oup.com\/journals\/pages\/open_access\/funder_policies\/chorus\/standard_publication_model"}],"funder":[{"name":"National Institute of Justice, Office of Justice Programs","award":["2018-DU-BX-0177"],"award-info":[{"award-number":["2018-DU-BX-0177"]}]},{"DOI":"10.13039\/100000074","name":"U.S. Department of Justice","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000074","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,3,28]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Motivation<\/jats:title>\n                  <jats:p>Read-merging algorithms that look solely at the reads can misalign and mis-merge the reads (especially near repetitive sequences).<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Results<\/jats:title>\n                  <jats:p>The C++ program ProSynAR has been written to take the reads\u2019 position in the reference into account when performing (and deciding whether to perform) a merge.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability<\/jats:title>\n                  <jats:p>*Nix users can retrieve the source from GitHub (https:\/\/github.com\/Benjamin-Crysup\/prosynar). Windows binary available at https:\/\/github.com\/Benjamin-Crysup\/prosynar\/releases\/download\/1.0\/prosynar.zip.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btac022","type":"journal-article","created":{"date-parts":[[2022,1,7]],"date-time":"2022-01-07T20:10:51Z","timestamp":1641586251000},"page":"2052-2053","source":"Crossref","is-referenced-by-count":2,"title":["ProSynAR: a reference aware read merger"],"prefix":"10.1093","volume":"38","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-2593-2280","authenticated-orcid":false,"given":"Benjamin","family":"Crysup","sequence":"first","affiliation":[{"name":"Center for Human Identification, University of North Texas , Fort Worth, TX 76107, USA"}]},{"given":"Bruce","family":"Budowle","sequence":"additional","affiliation":[{"name":"Center for Human Identification, University of North Texas , Fort Worth, TX 76107, USA"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9372-1127","authenticated-orcid":false,"given":"August E","family":"Woerner","sequence":"additional","affiliation":[{"name":"Center for Human Identification, University of North Texas , Fort Worth, TX 76107, USA"}]}],"member":"286","published-online":{"date-parts":[[2022,1,10]]},"reference":[{"key":"2023020108593210500_btac022-B1","doi-asserted-by":"crossref","first-page":"2479","DOI":"10.1093\/bioinformatics\/btab008","article-title":"ProDerAl: reference position dependent alignment","volume":"37","author":"Crysup","year":"2021","journal-title":"Bioinformatics"},{"key":"2023020108593210500_btac022-B2","doi-asserted-by":"crossref","first-page":"435","DOI":"10.1038\/nrg1348","article-title":"Microsatellites: simple sequences with complex evolution","volume":"5","author":"Ellegren","year":"2004","journal-title":"Nat. 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