{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,12]],"date-time":"2026-04-12T16:37:56Z","timestamp":1776011876690,"version":"3.50.1"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"12","license":[{"start":{"date-parts":[[2022,5,11]],"date-time":"2022-05-11T00:00:00Z","timestamp":1652227200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["DBI-1832184"],"award-info":[{"award-number":["DBI-1832184"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"name":"US Department of Energy","award":["DE-SC0019749"],"award-info":[{"award-number":["DE-SC0019749"]}]},{"name":"National Cancer Institute, National Institute of Allergy and Infectious Diseases"},{"DOI":"10.13039\/100000057","name":"National Institute of General Medical Sciences","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000057","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["R01GM133198"],"award-info":[{"award-number":["R01GM133198"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,6,13]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:sec><jats:title>Motivation<\/jats:title><jats:p>Mapping positional features from one-dimensional (1D) sequences onto three-dimensional (3D) structures of biological macromolecules is a powerful tool to show geometric patterns of biochemical annotations and provide a better understanding of the mechanisms underpinning protein and nucleic acid function at the atomic level.<\/jats:p><\/jats:sec><jats:sec><jats:title>Results<\/jats:title><jats:p>We present a new library designed to display fully customizable interactive views between 1D positional features of protein and\/or nucleic acid sequences and their 3D structures as isolated chains or components of macromolecular assemblies.<\/jats:p><\/jats:sec><jats:sec><jats:title>Availability and implementation<\/jats:title><jats:p>https:\/\/github.com\/rcsb\/rcsb-saguaro-3d.<\/jats:p><\/jats:sec><jats:sec><jats:title>Supplementary information<\/jats:title><jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p><\/jats:sec>","DOI":"10.1093\/bioinformatics\/btac317","type":"journal-article","created":{"date-parts":[[2022,5,7]],"date-time":"2022-05-07T03:34:21Z","timestamp":1651894461000},"page":"3304-3305","source":"Crossref","is-referenced-by-count":9,"title":["RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies"],"prefix":"10.1093","volume":"38","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-5593-735X","authenticated-orcid":false,"given":"Joan","family":"Segura","sequence":"first","affiliation":[{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yana","family":"Rose","sequence":"additional","affiliation":[{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0003-3576-0387","authenticated-orcid":false,"given":"Sebastian","family":"Bittrich","sequence":"additional","affiliation":[{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stephen K","family":"Burley","sequence":"additional","affiliation":[{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"},{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA"},{"name":"Institute for Quantitative Biomedicine, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA"},{"name":"Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey , Piscataway, NJ 08854, USA"},{"name":"Cancer Institute of New Jersey, Rutgers, The State University of New Jersey , New Brunswick, NJ 08901, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-9544-5621","authenticated-orcid":false,"given":"Jose M","family":"Duarte","sequence":"additional","affiliation":[{"name":"Research Collaboratory for Structural Bioinformatics Protein Data Bank, San Diego Supercomputer Center, University of California , La Jolla, CA 92093, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2022,5,11]]},"reference":[{"key":"2023041408202065100_","doi-asserted-by":"crossref","first-page":"871","DOI":"10.1126\/science.abj8754","article-title":"Accurate prediction of protein structures and interactions using a three-track neural network","volume":"373","author":"Baek","year":"2021","journal-title":"Science"},{"key":"2023041408202065100_","doi-asserted-by":"crossref","first-page":"D437","DOI":"10.1093\/nar\/gkaa1038","article-title":"RCSB Protein Data Bank: powerful new tools for exploring 3D 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