{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,23]],"date-time":"2026-03-23T15:59:57Z","timestamp":1774281597886,"version":"3.50.1"},"reference-count":20,"publisher":"Oxford University Press (OUP)","issue":"14","license":[{"start":{"date-parts":[[2022,5,31]],"date-time":"2022-05-31T00:00:00Z","timestamp":1653955200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by-nc\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]},{"name":"National Library of Medicine Program","award":["01LM011945-01"],"award-info":[{"award-number":["01LM011945-01"]}]},{"name":"NSF-NRT","award":["1735095"],"award-info":[{"award-number":["1735095"]}]},{"name":"Interdisciplinary Training in Complex Networks and Systems"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2022,7,11]]},"DOI":"10.1093\/bioinformatics\/btac360","type":"journal-article","created":{"date-parts":[[2022,6,1]],"date-time":"2022-06-01T00:42:19Z","timestamp":1654044139000},"page":"3674-3675","source":"Crossref","is-referenced-by-count":6,"title":["On the feasibility of dynamical analysis of network models of biochemical regulation"],"prefix":"10.1093","volume":"38","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-9402-887X","authenticated-orcid":false,"given":"Luis M","family":"Rocha","sequence":"first","affiliation":[{"name":"Consortium of Social and Biomedical Complexity, Department of Systems Science and Industrial Engineering, Binghamton University (State University of New York) , Binghamton, NY 13902, USA"},{"name":"Instituto Gulbenkian de Ci\u00eancia , 2780-156 Oeiras, Portugal"}]}],"member":"286","published-online":{"date-parts":[[2022,5,31]]},"reference":[{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"1574","DOI":"10.1109\/TCBB.2018.2889102","article-title":"Causal reasoning on Boolean control networks based on abduction: theory and application to cancer drug discovery","volume":"16","author":"Biane","year":"2019","journal-title":"IEEE\/ACM Trans. Comput. Biol. Bioinform"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"1046","DOI":"10.3389\/fphys.2018.01046","article-title":"CANA: a python package for quantifying control and canalization in Boolean networks","volume":"9","author":"Correia","year":"2018","journal-title":"Front. Physiol"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"563","DOI":"10.1007\/s10884-013-9312-7","article-title":"Dynamics and control at feedback vertex sets. I: informative and determining nodes in regulatory networks","volume":"25","author":"Fiedler","year":"2013","journal-title":"J. Dyn. Diff. Equat"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"24456","DOI":"10.1038\/srep24456","article-title":"Control of complex networks requires both structure and dynamics","volume":"6","author":"Gates","year":"2016","journal-title":"Sci. Rep"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"e2022598118","DOI":"10.1073\/pnas.2022598118","article-title":"The effective graph reveals redundancy, canalization, and control pathways in biochemical regulation and signaling","volume":"118","author":"Gates","year":"2021","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","DOI":"10.1073\/pnas.2103698118","article-title":"Identifying \u201cmore equal than others\u201d edges in diverse biochemical networks","volume":"118","author":"Hari","year":"2021","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"1913","DOI":"10.1073\/pnas.0705088105","article-title":"Emergent decision-making in biological signal transduction networks","volume":"105","author":"Helikar","year":"2008","journal-title":"Proc. Natl. Acad. Sci. USA"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"2311","DOI":"10.1093\/plphys\/kiab344","article-title":"Boolink: a graphical interface for open access Boolean network simulations and use in guard cell CO2 signaling","volume":"187","author":"Karanam","year":"2021","journal-title":"Plant Physiol"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"770","DOI":"10.1093\/bioinformatics\/btw682","article-title":"PyBoolNet: a python package for the generation, analysis and visualization of Boolean networks","volume":"33","author":"Klarner","year":"2017","journal-title":"Bioinformatics"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1038\/nature10011","article-title":"Controllability of complex networks","volume":"473","author":"Liu","year":"2011","journal-title":"Nature"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"e55946","DOI":"10.1371\/journal.pone.0055946","article-title":"Canalization and control in automata networks: body segmentation in Drosophila melanogaster","volume":"8","author":"Marques-Pita","year":"2013","journal-title":"PLoS One"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"1211","DOI":"10.1109\/T-C.1971.223108","article-title":"On the bounds for state-set size in the proofs of equivalence between deterministic, nondeterministic, and two-way finite automata","volume":"C-20","author":"Moore","year":"1971","journal-title":"IEEE Trans. Comput"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"1647","DOI":"10.1038\/srep01647","article-title":"Structural controllability of unidirectional bipartite networks","volume":"3","author":"Nacher","year":"2013","journal-title":"Sci. Rep"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"1154","DOI":"10.1093\/bioinformatics\/btv013","article-title":"Cooperative development of logical modelling standards and tools with CoLoMoTo","volume":"31","author":"Naldi","year":"2015","journal-title":"Bioinformatics"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"4256","DOI":"10.1038\/s41467-020-18112-5","article-title":"Reconciling qualitative, abstract, and scalable modeling of biological networks","volume":"11","author":"Paulev\u00e9","year":"2020","journal-title":"Nat. Commun"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"eabf8124","DOI":"10.1126\/sciadv.abf8124","article-title":"Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks","volume":"7","author":"Rozum","year":"2021","journal-title":"Sci. Adv"},{"key":"2023041405363257900_","first-page":"1","author":"Su","year":"2020"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"3530","DOI":"10.1093\/bioinformatics\/btab277","article-title":"Capturing dynamic relevance in Boolean networks using graph theoretical measures","volume":"37","author":"Weidner","year":"2021","journal-title":"Bioinformatics"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"e1004193","DOI":"10.1371\/journal.pcbi.1004193","article-title":"Cell fate reprogramming by control of intracellular network dynamics","volume":"11","author":"Za\u00f1udo","year":"2015","journal-title":"PLoS Comput. Biol"},{"key":"2023041405363257900_","doi-asserted-by":"crossref","first-page":"7234","DOI":"10.1073\/pnas.1617387114","article-title":"Structure-based control of complex networks with nonlinear dynamics","volume":"114","author":"Zanudo","year":"2017","journal-title":"Proc. Natl. Acad. Sci. USA"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/advance-article-pdf\/doi\/10.1093\/bioinformatics\/btac360\/44044841\/btac360.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/38\/14\/3674\/49883943\/btac360.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/38\/14\/3674\/49883943\/btac360.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,11,22]],"date-time":"2023-11-22T13:38:09Z","timestamp":1700660289000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/38\/14\/3674\/6596040"}},"subtitle":[],"editor":[{"given":"Alfonso","family":"Valencia","sequence":"additional","affiliation":[]}],"short-title":[],"issued":{"date-parts":[[2022,5,31]]},"references-count":20,"journal-issue":{"issue":"14","published-print":{"date-parts":[[2022,7,11]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btac360","relation":{},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"value":"1367-4803","type":"print"},{"value":"1367-4811","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2022,7,15]]},"published":{"date-parts":[[2022,5,31]]}}}