{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,25]],"date-time":"2026-06-25T02:58:41Z","timestamp":1782356321316,"version":"3.54.5"},"reference-count":16,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2022,11,17]],"date-time":"2022-11-17T00:00:00Z","timestamp":1668643200000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Nature Science Foundation of China","award":["U1811461"],"award-info":[{"award-number":["U1811461"]}]},{"name":"Key-Area Research and Development Program of Guangdong Province","award":["2019B010940001"],"award-info":[{"award-number":["2019B010940001"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:sec><jats:title>Summary<\/jats:title><jats:p>VSTH is a user-friendly web server with the complete workflow for virtual screening. By self-customized visualization software, users can interactively prepare protein files, set docking sites as well as view binding conformers in a target protein in a few clicks. We provide serval purchasable ligand libraries for selection. And, we integrate six open-source docking programs as computing engine, or as conformational sampling tools for DLIGAND2. Users can select various docking methods simultaneously and personalize computing parameters. After docking processing, user can filter docking conformations by ranked scores, or cluster-based molecular similarity to find highly populated clusters of low-energy conformations.<\/jats:p><\/jats:sec><jats:sec><jats:title>Availability and implementation<\/jats:title><jats:p>The VSTH web server is free and open to all users at https:\/\/matgen.nscc-gz.cn\/VirtualScreening.html<\/jats:p><\/jats:sec><jats:sec><jats:title>Supplementary information<\/jats:title><jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p><\/jats:sec>","DOI":"10.1093\/bioinformatics\/btac740","type":"journal-article","created":{"date-parts":[[2022,11,17]],"date-time":"2022-11-17T12:45:19Z","timestamp":1668689119000},"source":"Crossref","is-referenced-by-count":11,"title":["VSTH: a user-friendly web server for structure-based virtual screening on Tianhe-2"],"prefix":"10.1093","volume":"39","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3589-1339","authenticated-orcid":false,"given":"Qing","family":"Mo","sequence":"first","affiliation":[{"name":"National Supercomputer Center in Guangzhou, School of Computer Science and Engineering, Sun Yat-Sen University , Guangzhou 510006, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zexin","family":"Xu","sequence":"additional","affiliation":[{"name":"National Supercomputer Center in Guangzhou, School of Computer Science and Engineering, Sun Yat-Sen University , Guangzhou 510006, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hui","family":"Yan","sequence":"additional","affiliation":[{"name":"National Supercomputer Center in Guangzhou, School of Computer Science and Engineering, Sun Yat-Sen University , Guangzhou 510006, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8746-9917","authenticated-orcid":false,"given":"Pin","family":"Chen","sequence":"additional","affiliation":[{"name":"National Supercomputer Center in Guangzhou, School of Computer Science and Engineering, Sun Yat-Sen University , Guangzhou 510006, China"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Yutong","family":"Lu","sequence":"additional","affiliation":[{"name":"National Supercomputer Center in Guangzhou, School of Computer Science and Engineering, Sun Yat-Sen University , Guangzhou 510006, China"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2022,11,17]]},"reference":[{"key":"2023010107522150000_btac740-B11","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1186\/s13321-019-0373-4","article-title":"DLIGAND2: an improved knowledge-based energy function for protein\u2013ligand interactions using the distance-scaled, finite, ideal-gas reference state","volume":"11","author":"Chen","year":"2019","journal-title":"J. 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