{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,15]],"date-time":"2026-04-15T08:56:11Z","timestamp":1776243371392,"version":"3.50.1"},"reference-count":34,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2023,1,5]],"date-time":"2023-01-05T00:00:00Z","timestamp":1672876800000},"content-version":"vor","delay-in-days":4,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Biology and Bioengineering Division at the California Institute of Technology"},{"name":"Chen Graduate Innovator Grant","award":["CHEN.SYS3.CGIAFY21"],"award-info":[{"award-number":["CHEN.SYS3.CGIAFY21"]}]},{"DOI":"10.13039\/100000002","name":"National Institutes of Health","doi-asserted-by":"publisher","award":["U19MH114830"],"award-info":[{"award-number":["U19MH114830"]}],"id":[{"id":"10.13039\/100000002","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Motivation<\/jats:title>\n                    <jats:p>A recurring challenge in interpreting genomic data is the assessment of results in the context of existing reference databases. With the increasing number of command line and Python users, there is a need for tools implementing automated, easy programmatic access to curated reference information stored in a diverse collection of large, public genomic databases.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>gget is a free and open-source command line tool and Python package that enables efficient querying of genomic reference databases, such as Ensembl. gget consists of a collection of separate but interoperable modules, each designed to facilitate one type of database querying required for genomic data analysis in a single line of code.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>The manual and source code are available at https:\/\/github.com\/pachterlab\/gget.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Supplementary information<\/jats:title>\n                    <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btac836","type":"journal-article","created":{"date-parts":[[2023,1,3]],"date-time":"2023-01-03T16:55:48Z","timestamp":1672764948000},"source":"Crossref","is-referenced-by-count":35,"title":["Efficient querying of genomic reference databases with\n                    <i>gget<\/i>"],"prefix":"10.1093","volume":"39","author":[{"ORCID":"https:\/\/orcid.org\/0000-0003-1379-2927","authenticated-orcid":false,"given":"Laura","family":"Luebbert","sequence":"first","affiliation":[{"name":"Division of Biology and Biological Engineering, California Institute of Technology , Pasadena, CA 91125, USA"}]},{"given":"Lior","family":"Pachter","sequence":"additional","affiliation":[{"name":"Division of Biology and Biological Engineering, California Institute of Technology , Pasadena, CA 91125, USA"},{"name":"Department of Computing and Mathematical Sciences, California Institute of Technology , Pasadena, CA 91125, USA"}]}],"member":"286","published-online":{"date-parts":[[2023,1,5]]},"reference":[{"key":"2023011212505423500_btac836-B1","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. 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