{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:34:17Z","timestamp":1772138057215,"version":"3.50.1"},"reference-count":20,"publisher":"Oxford University Press (OUP)","issue":"1","license":[{"start":{"date-parts":[[2023,1,2]],"date-time":"2023-01-02T00:00:00Z","timestamp":1672617600000},"content-version":"vor","delay-in-days":1,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>Phylodynamic methods are central to studies of the geographic and demographic history of disease outbreaks. Inference under discrete-geographic phylodynamic models\u2014which involve many parameters that must be inferred from minimal information\u2014is inherently sensitive to our prior beliefs about the model parameters. We present an interactive utility, PrioriTree, to help researchers identify and accommodate prior sensitivity in discrete-geographic inferences. Specifically, PrioriTree provides a suite of functions to generate input files for\u2014and summarize output from\u2014BEAST analyses for performing robust Bayesian inference, data-cloning analyses and assessing the relative and absolute fit of candidate discrete-geographic (prior) models to empirical datasets.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>PrioriTree is distributed as an R package available at https:\/\/github.com\/jsigao\/prioritree, with a comprehensive user manual provided at https:\/\/bookdown.org\/jsigao\/prioritree_manual\/.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btac849","type":"journal-article","created":{"date-parts":[[2022,12,30]],"date-time":"2022-12-30T09:38:30Z","timestamp":1672393110000},"source":"Crossref","is-referenced-by-count":6,"title":["PrioriTree: a utility for improving phylodynamic analyses in BEAST"],"prefix":"10.1093","volume":"39","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-5108-828X","authenticated-orcid":false,"given":"Jiansi","family":"Gao","sequence":"first","affiliation":[{"name":"Department of Evolution and Ecology, University of California, Davis , Davis, CA 95616, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael R","family":"May","sequence":"additional","affiliation":[{"name":"Department of Evolution and Ecology, University of California, Davis , Davis, CA 95616, USA"},{"name":"Department of Integrative Biology, University of California, Berkeley , Berkeley, CA 94720, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bruce","family":"Rannala","sequence":"additional","affiliation":[{"name":"Department of Evolution and Ecology, University of California, Davis , Davis, CA 95616, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brian R","family":"Moore","sequence":"additional","affiliation":[{"name":"Department of Evolution and Ecology, University of California, Davis , Davis, CA 95616, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2023,1,2]]},"reference":[{"key":"2023011609270137700_btac849-B1","doi-asserted-by":"crossref","first-page":"2157","DOI":"10.1093\/molbev\/mss084","article-title":"Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty","volume":"29","author":"Baele","year":"2012","journal-title":"Mol. 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