{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,8,7]],"date-time":"2026-08-07T23:38:39Z","timestamp":1786145919090,"version":"3.56.0"},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"2","license":[{"start":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T00:00:00Z","timestamp":1675209600000},"content-version":"vor","delay-in-days":0,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000780","name":"European Union","doi-asserted-by":"publisher","award":["891690"],"award-info":[{"award-number":["891690"]}],"id":[{"id":"10.13039\/501100000780","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,2,3]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>We present NMRtist, an online platform that combines deep learning, large-scale optimization and cloud computing to automate protein NMR spectra analysis. Our website provides virtual storage for NMR spectra deposition together with a set of applications designed for automated peak picking, chemical shift assignment and protein structure determination. The system can be used by non-experts and allows protein assignments and structures to be determined within hours after the measurements, strictly without any human intervention.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>NMRtist is freely available to non-commercial users at https:\/\/nmrtist.org.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Supplementary information<\/jats:title>\n                  <jats:p>Supplementary data are available at Bioinformatics online.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btad066","type":"journal-article","created":{"date-parts":[[2023,2,1]],"date-time":"2023-02-01T23:55:33Z","timestamp":1675295733000},"source":"Crossref","is-referenced-by-count":36,"title":["NMRtist: an online platform for automated biomolecular NMR spectra analysis"],"prefix":"10.1093","volume":"39","author":[{"given":"Piotr","family":"Klukowski","sequence":"first","affiliation":[{"name":"Laboratory of Physical Chemistry, ETH Zurich , 8093 Zurich, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Roland","family":"Riek","sequence":"additional","affiliation":[{"name":"Laboratory of Physical Chemistry, ETH Zurich , 8093 Zurich, Switzerland"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2911-7574","authenticated-orcid":false,"given":"Peter","family":"G\u00fcntert","sequence":"additional","affiliation":[{"name":"Laboratory of Physical Chemistry, ETH Zurich , 8093 Zurich, Switzerland"},{"name":"Institute of Biophysical Chemistry, Goethe University Frankfurt , 60438 Frankfurt am Main, Germany"},{"name":"Department of Chemistry, Tokyo Metropolitan University , Hachioji, Tokyo 192-0397, Japan"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2023,2,1]]},"reference":[{"key":"2023021015010597500_btad066-B1","doi-asserted-by":"crossref","first-page":"267","DOI":"10.1007\/s10858-013-9708-z","article-title":"Peakmatch: a simple and robust method for peak list matching","volume":"55","author":"Buchner","year":"2013","journal-title":"J. Biomol. NMR"},{"key":"2023021015010597500_btad066-B2","doi-asserted-by":"crossref","first-page":"453","DOI":"10.1007\/s10858-015-9924-9","article-title":"Combined automated NOE assignment and structure calculation with CYANA","volume":"62","author":"G\u00fcntert","year":"2015","journal-title":"J. Biomol. NMR"},{"key":"2023021015010597500_btad066-B3","doi-asserted-by":"crossref","first-page":"433","DOI":"10.1038\/nsmb.3041","article-title":"NMR exchange format: a unified and open standard for representation of NMR restraint data","volume":"22","author":"Gutmanas","year":"2015","journal-title":"Nat. Struct. Mol. 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Biophys"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/advance-article-pdf\/doi\/10.1093\/bioinformatics\/btad066\/49019563\/btad066.pdf","content-type":"application\/pdf","content-version":"am","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/39\/2\/btad066\/49156531\/btad066.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/39\/2\/btad066\/49156531\/btad066.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,10]],"date-time":"2023-02-10T15:44:10Z","timestamp":1676043850000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/doi\/10.1093\/bioinformatics\/btad066\/7019933"}},"subtitle":[],"editor":[{"given":"Lenore","family":"Cowen","sequence":"additional","affiliation":[],"role":[{"vocabulary":"crossref","role":"editor"}]}],"short-title":[],"issued":{"date-parts":[[2023,2,1]]},"references-count":7,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2023,2,3]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btad066","relation":{},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"value":"1367-4803","type":"print"},{"value":"1367-4811","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2023,2,1]]},"published":{"date-parts":[[2023,2,1]]},"article-number":"btad066"}}