{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,7,30]],"date-time":"2025-07-30T11:42:35Z","timestamp":1753875755660,"version":"3.41.2"},"reference-count":20,"publisher":"Oxford University Press (OUP)","issue":"7","license":[{"start":{"date-parts":[[2023,7,14]],"date-time":"2023-07-14T00:00:00Z","timestamp":1689292800000},"content-version":"vor","delay-in-days":13,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,7,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>Viral genes, that are frequently small genes and\/or with large overlaps, are still difficult to predict accurately. To help predict all genes in viral genomes, we provide CodingDiv that detects SNP-level microdiversity of all potential coding regions, using metagenomic reads and\/or similar sequences from external databases. Protein coding regions can then be identified as the ones containing more synonymous SNPs than unfavorable nonsynonymous substitutions SNPs.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>CodingDiv is released under the GPL license. Source code is available at https:\/\/github.com\/ericolo\/codingDiv. The software can be installed and used through a docker container.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btad408","type":"journal-article","created":{"date-parts":[[2023,7,13]],"date-time":"2023-07-13T20:31:23Z","timestamp":1689280283000},"source":"Crossref","is-referenced-by-count":0,"title":["CodingDiv: analyzing SNP-level microdiversity to discriminate between coding and noncoding regions in viral genomes"],"prefix":"10.1093","volume":"39","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4241-1161","authenticated-orcid":false,"given":"Eric","family":"Olo Ndela","sequence":"first","affiliation":[{"name":"Universit\u00e9 Clermont Auvergne, CNRS, LMGE , F-63000 Clermont-Ferrand, France"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-4968-3995","authenticated-orcid":false,"given":"Fran\u00e7ois","family":"Enault","sequence":"additional","affiliation":[{"name":"Universit\u00e9 Clermont Auvergne, CNRS, LMGE , F-63000 Clermont-Ferrand, 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