{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:34:22Z","timestamp":1772138062346,"version":"3.50.1"},"reference-count":18,"publisher":"Oxford University Press (OUP)","issue":"8","license":[{"start":{"date-parts":[[2023,8,3]],"date-time":"2023-08-03T00:00:00Z","timestamp":1691020800000},"content-version":"vor","delay-in-days":2,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000268","name":"Biotechnology and Biological Sciences Research Council","doi-asserted-by":"publisher","award":["BB\/S006567\/1"],"award-info":[{"award-number":["BB\/S006567\/1"]}],"id":[{"id":"10.13039\/501100000268","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100000268","name":"Biotechnology and Biological Sciences Research Council","doi-asserted-by":"publisher","award":["BB\/S006680\/1"],"award-info":[{"award-number":["BB\/S006680\/1"]}],"id":[{"id":"10.13039\/501100000268","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,8,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>Accurate gene prediction is essential for successful metagenome analysis. We present KOunt, a Snakemake pipeline, that precisely quantifies KEGG orthologue abundance.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>KOunt is available on GitHub: https:\/\/github.com\/WatsonLab\/KOunt. The KOunt reference database is available on figshare: https:\/\/doi.org\/10.6084\/m9.figshare.21269715. Test data are available at https:\/\/doi.org\/10.6084\/m9.figshare.22250152 and version 1.2.0 of KOunt at https:\/\/doi.org\/10.6084\/m9.figshare.23607834.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btad483","type":"journal-article","created":{"date-parts":[[2023,8,3]],"date-time":"2023-08-03T13:50:41Z","timestamp":1691070641000},"source":"Crossref","is-referenced-by-count":4,"title":["KOunt: a reproducible KEGG orthologue abundance workflow"],"prefix":"10.1093","volume":"39","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-8978-8946","authenticated-orcid":false,"given":"Jennifer","family":"Mattock","sequence":"first","affiliation":[{"name":"The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh , Edinburgh, Midlothian, United 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