{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,11]],"date-time":"2026-04-11T07:25:06Z","timestamp":1775892306982,"version":"3.50.1"},"reference-count":40,"publisher":"Oxford University Press (OUP)","issue":"10","license":[{"start":{"date-parts":[[2023,10,3]],"date-time":"2023-10-03T00:00:00Z","timestamp":1696291200000},"content-version":"vor","delay-in-days":2,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100000038","name":"Natural Sciences and Engineering Research Council of Canada","doi-asserted-by":"publisher","id":[{"id":"10.13039\/501100000038","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,10,3]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>Computational methods for the quantification and visualization of the relative contribution of molecular interactions to the stability of biomolecular structures and complexes are fundamental to understand, modulate and engineer biological processes. Here, we present Surfaces, an easy to use, fast and customizable software for quantification and visualization of molecular interactions based on the calculation of surface areas in contact. Surfaces calculations shows equivalent or better correlations with experimental data as computationally expensive methods based on molecular dynamics.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>All scripts are available at https:\/\/github.com\/NRGLab\/Surfaces. Surface\u2019s documentation is available at https:\/\/surfaces-tutorial.readthedocs.io\/en\/latest\/index.html.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btad608","type":"journal-article","created":{"date-parts":[[2023,9,29]],"date-time":"2023-09-29T16:36:20Z","timestamp":1696005380000},"source":"Crossref","is-referenced-by-count":19,"title":["Surfaces: a software to quantify and visualize interactions within and between proteins and ligands"],"prefix":"10.1093","volume":"39","author":[{"given":"Nat\u00e1lia","family":"Teruel","sequence":"first","affiliation":[{"name":"Department of Pharmacology and Physiology, Faculty of Medicine, Universit\u00e9 de Montr\u00e9al , Montreal H3T 1J4,","place":["Canada"]}]},{"given":"Vinicius Magalh\u00e3es","family":"Borges","sequence":"additional","affiliation":[{"name":"Department of Biomedical Sciences, Joan C. Edwards School of Medicine, Marshall University , Huntington, WV,","place":["USA"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6971-7224","authenticated-orcid":false,"given":"Rafael","family":"Najmanovich","sequence":"additional","affiliation":[{"name":"Department of Pharmacology and Physiology, Faculty of Medicine, Universit\u00e9 de Montr\u00e9al , Montreal H3T 1J4,","place":["Canada"]}]}],"member":"286","published-online":{"date-parts":[[2023,10,3]]},"reference":[{"key":"2025032507215990800_btad608-B1","doi-asserted-by":"crossref","first-page":"e1903093","DOI":"10.1002\/smll.201903093","article-title":"The role of protein engineering in biomedical applications of mammalian synthetic biology","volume":"16","author":"Bojar","year":"2020","journal-title":"Small"},{"key":"2025032507215990800_btad608-B2","doi-asserted-by":"crossref","first-page":"1437","DOI":"10.1080\/00986440801964137","article-title":"Scope and limits of molecular 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