{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:34:22Z","timestamp":1772138062187,"version":"3.50.1"},"reference-count":13,"publisher":"Oxford University Press (OUP)","issue":"10","license":[{"start":{"date-parts":[[2023,10,9]],"date-time":"2023-10-09T00:00:00Z","timestamp":1696809600000},"content-version":"vor","delay-in-days":8,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100002347","name":"Bundesministerium f\u00fcr Bildung und Forschung","doi-asserted-by":"publisher","award":["161L0212E"],"award-info":[{"award-number":["161L0212E"]}],"id":[{"id":"10.13039\/501100002347","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2023,10,3]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Motivation<\/jats:title>\n                    <jats:p>Multiple factors can impact accuracy and reproducibility of mass spectrometry data. There is a need to integrate quality assessment and control into data analytic workflows.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Results<\/jats:title>\n                    <jats:p>The MsQuality package calculates 43 low-level quality metrics based on the controlled mzQC vocabulary defined by the HUPO-PSI on a single mass spectrometry-based measurement of a sample. It helps to identify low-quality measurements and track data quality. Its use of community-standard quality metrics facilitates comparability of quality assessment and control (QA\/QC) criteria across datasets.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>The R package MsQuality is available through Bioconductor at https:\/\/bioconductor.org\/packages\/MsQuality.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btad618","type":"journal-article","created":{"date-parts":[[2023,10,6]],"date-time":"2023-10-06T16:20:04Z","timestamp":1696609204000},"source":"Crossref","is-referenced-by-count":9,"title":["MsQuality: an interoperable open-source package for the calculation of standardized quality metrics of mass spectrometry data"],"prefix":"10.1093","volume":"39","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7917-5580","authenticated-orcid":false,"given":"Thomas","family":"Naake","sequence":"first","affiliation":[{"name":"Genome Biology Unit, European Molecular Biology Laboratory , Heidelberg 69117, Germany"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6977-7147","authenticated-orcid":false,"given":"Johannes","family":"Rainer","sequence":"additional","affiliation":[{"name":"Institute for Biomedicine (Affiliated to the University of L\u00fcbeck), Eurac Research , Bolzano 39100, Italy"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-0474-2218","authenticated-orcid":false,"given":"Wolfgang","family":"Huber","sequence":"additional","affiliation":[{"name":"Genome Biology Unit, European Molecular Biology Laboratory , Heidelberg 69117, 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