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Its primary objective is to identify condition-specific or differentially expressed sequences, regardless of gene or transcript annotation.<\/jats:p>\n <\/jats:sec>\n \n Results<\/jats:title>\n KaMRaT is implemented in C++. Major functions include scoring k-mers based on count statistics, merging overlapping k-mers into contigs and selecting k-mers based on their occurrence across specific samples.<\/jats:p>\n <\/jats:sec>\n \n Availability and implementation<\/jats:title>\n Source code and documentation are available via https:\/\/github.com\/Transipedia\/KaMRaT.<\/jats:p>\n <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btae090","type":"journal-article","created":{"date-parts":[[2024,3,6]],"date-time":"2024-03-06T05:12:41Z","timestamp":1709701961000},"source":"Crossref","is-referenced-by-count":0,"title":["KaMRaT<\/i>: a C++ toolkit for k<\/i>-mer count matrix dimension reduction"],"prefix":"10.1093","volume":"40","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-1264-5303","authenticated-orcid":false,"given":"Haoliang","family":"Xue","sequence":"first","affiliation":[{"name":"I2BC, Universit\u00e9 Paris-Saclay, CNRS, CEA , 91190 Gif-sur-Yvette, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-2431-7825","authenticated-orcid":false,"given":"M\u00e9lina","family":"Gallopin","sequence":"additional","affiliation":[{"name":"I2BC, Universit\u00e9 Paris-Saclay, CNRS, CEA , 91190 Gif-sur-Yvette, France"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Camille","family":"Marchet","sequence":"additional","affiliation":[{"name":"Univ. 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