{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,12]],"date-time":"2026-04-12T13:37:59Z","timestamp":1776001079503,"version":"3.50.1"},"reference-count":20,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2024,3,7]],"date-time":"2024-03-07T00:00:00Z","timestamp":1709769600000},"content-version":"vor","delay-in-days":6,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/501100009708","name":"Novo Nordisk Foundation","doi-asserted-by":"publisher","award":["NNF20CC0035580"],"award-info":[{"award-number":["NNF20CC0035580"]}],"id":[{"id":"10.13039\/501100009708","id-type":"DOI","asserted-by":"publisher"}]},{"DOI":"10.13039\/501100009708","name":"Novo Nordisk Foundation","doi-asserted-by":"publisher","award":["NNF14OC0009473"],"award-info":[{"award-number":["NNF14OC0009473"]}],"id":[{"id":"10.13039\/501100009708","id-type":"DOI","asserted-by":"publisher"}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,3,4]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>Shu is a visualization tool that integrates diverse data types into a metabolic map, with a focus on supporting multiple conditions and visualizing distributions. The goal is to provide a unified platform for handling the growing volume of multi-omics data, leveraging the metabolic maps developed by the metabolic modeling community. In addition, shu offers a streamlined python API, based on the Grammar of Graphics, for easy integration with data pipelines.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>Freely available at https:\/\/github.com\/biosustain\/shu under MIT\/Apache 2.0 license. Binaries are available in the release page of the repository and the web application is deployed at https:\/\/biosustain.github.io\/shu.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btae140","type":"journal-article","created":{"date-parts":[[2024,3,6]],"date-time":"2024-03-06T06:18:01Z","timestamp":1709705881000},"source":"Crossref","is-referenced-by-count":2,"title":["Shu: visualization of high-dimensional biological pathways"],"prefix":"10.1093","volume":"40","author":[{"ORCID":"https:\/\/orcid.org\/0000-0001-7365-0299","authenticated-orcid":false,"given":"Jorge","family":"Carrasco Muriel","sequence":"first","affiliation":[{"name":"The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark , DK-2800 Kgs. Lyngby, Denmark"}]},{"given":"Nicholas","family":"Cowie","sequence":"additional","affiliation":[{"name":"The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark , DK-2800 Kgs. Lyngby, Denmark"}]},{"given":"Shannara","family":"Taylor Parkins","sequence":"additional","affiliation":[{"name":"The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark , DK-2800 Kgs. Lyngby, Denmark"}]},{"given":"Marjan","family":"Mansouvar","sequence":"additional","affiliation":[{"name":"Department of Biotechnology and Biomedicine, Technical University of Denmark , DK-2800 Kgs. Lyngby, Denmark"}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-7109-3270","authenticated-orcid":false,"given":"Teddy","family":"Groves","sequence":"additional","affiliation":[{"name":"The Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark , DK-2800 Kgs. Lyngby, Denmark"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8191-3511","authenticated-orcid":false,"given":"Lars Keld","family":"Nielsen","sequence":"additional","affiliation":[{"name":"Australian Institute for Bioengineering and Nanotechnology (AIBN), The University of Queensland , St Lucia, QLD 4067, Australia"}]}],"member":"286","published-online":{"date-parts":[[2024,3,7]]},"reference":[{"key":"2024032203513885400_btae140-B1","doi-asserted-by":"crossref","first-page":"967205","DOI":"10.3389\/fmolb.2022.967205","article-title":"Computational approaches for network-based integrative multi-omics analysis","volume":"9","author":"Agamah","year":"2022","journal-title":"Front Mol Biosci"},{"key":"2024032203513885400_btae140-B2","doi-asserted-by":"crossref","first-page":"270","DOI":"10.1016\/j.ymben.2012.03.001","article-title":"Computational tools for metabolic engineering","volume":"14","author":"Copeland","year":"2012","journal-title":"Metab 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