{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,4]],"date-time":"2025-09-04T14:01:32Z","timestamp":1756994492238,"version":"3.41.2"},"reference-count":28,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2024,5,2]],"date-time":"2024-05-02T00:00:00Z","timestamp":1714608000000},"content-version":"vor","delay-in-days":1,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"DOI":"10.13039\/100000001","name":"National Science Foundation","doi-asserted-by":"publisher","award":["#MCB-2123367","R01GM147816","R21AI168482"],"award-info":[{"award-number":["#MCB-2123367","R01GM147816","R21AI168482"]}],"id":[{"id":"10.13039\/100000001","id-type":"DOI","asserted-by":"publisher"}]},{"name":"Suzanne and Walter Scott Foundation"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,5,2]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:sec>\n                  <jats:title>Summary<\/jats:title>\n                  <jats:p>PlasCAT (Plasmid Cloud Assembly Tool) is an easy-to-use cloud-based bioinformatics tool that enables de novo plasmid sequence assembly from raw sequencing data. Nontechnical users can now assemble sequences from long reads and short reads without ever touching a line of code. PlasCAT uses high-performance computing servers to reduce run times on assemblies and deliver results faster.<\/jats:p>\n               <\/jats:sec>\n               <jats:sec>\n                  <jats:title>Availability and implementation<\/jats:title>\n                  <jats:p>PlasCAT is freely available on the web at https:\/\/sequencing.genofab.com. The assembly pipeline source code and server code are available for download at https:\/\/bitbucket.org\/genofabinc\/workspace\/projects\/PLASCAT. Click the Cancel button to access the source code without authenticating. Web servers implemented in React.js and Python, with all major browsers supported.<\/jats:p>\n               <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btae299","type":"journal-article","created":{"date-parts":[[2024,5,2]],"date-time":"2024-05-02T20:24:52Z","timestamp":1714681492000},"source":"Crossref","is-referenced-by-count":4,"title":["PlasCAT: Plasmid Cloud Assembly Tool"],"prefix":"10.1093","volume":"40","author":[{"given":"Samuel","family":"Peccoud","sequence":"first","affiliation":[{"name":"GenoFAB, Inc. , Fort Collins, CO 80528, United States"}]},{"given":"Casey-Tyler","family":"Berezin","sequence":"additional","affiliation":[{"name":"Department of Chemical and Biological Engineering, Colorado State University , Fort Collins, CO 80523, United States"}]},{"given":"Sarah I","family":"Hernandez","sequence":"additional","affiliation":[{"name":"Department of Chemical and Biological Engineering, Colorado State University , Fort Collins, CO 80523, United 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