{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,2]],"date-time":"2026-07-02T03:45:03Z","timestamp":1782963903179,"version":"3.54.5"},"reference-count":13,"publisher":"Oxford University Press (OUP)","issue":"6","license":[{"start":{"date-parts":[[2024,6,10]],"date-time":"2024-06-10T00:00:00Z","timestamp":1717977600000},"content-version":"vor","delay-in-days":9,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"German Funding Agency","award":["SFB 1074"],"award-info":[{"award-number":["SFB 1074"]}]}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,6,3]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>The vast amount of publicly available genomic data requires analysis and visualization tools. Here, we present figeno, an application for generating publication-quality FIgures for GENOmics. Figeno particularly focuses on multi-region views across genomic breakpoints and on long reads with base modifications. In addition, we support epigenomic data including ATAC-seq, ChIP-seq or HiC, as well as whole genome sequencing data with copy numbers and structural variants.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>Figeno is available as a python package with both a command line and graphical user interface. It can be installed via PyPI and the source code is available at https:\/\/github.com\/CompEpigen\/figeno.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btae354","type":"journal-article","created":{"date-parts":[[2024,6,3]],"date-time":"2024-06-03T15:26:34Z","timestamp":1717428394000},"source":"Crossref","is-referenced-by-count":17,"title":["Figeno: multi-region genomic figures with long-read support"],"prefix":"10.1093","volume":"40","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3612-8562","authenticated-orcid":false,"given":"Etienne","family":"Sollier","sequence":"first","affiliation":[{"name":"Division of Cancer Epigenomics, German Cancer Research Center (DKFZ) , 69120 Heidelberg, Germany"},{"name":"Faculty of Biosciences, Ruprecht-Karls-University of Heidelberg , 69120 Heidelberg, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Jessica","family":"Heilmann","sequence":"additional","affiliation":[{"name":"Division of Cancer 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