{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,26]],"date-time":"2026-02-26T20:34:29Z","timestamp":1772138069808,"version":"3.50.1"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"9","license":[{"start":{"date-parts":[[2024,9,11]],"date-time":"2024-09-11T00:00:00Z","timestamp":1726012800000},"content-version":"vor","delay-in-days":10,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2024,9,2]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>MGI sequencing is reported to be an inexpensive solution to obtain genomics information. There is a growing need for software and tools to analyse MGI\u2019s outputs efficiently. mgikit is a tool collection to demultiplex MGI fastq data, reformat it effectively and produce visual quality reports. mgikit overcomes several limitations of the standard MGI demultiplexer. It is highly customizable to suit different kinds of datasets and is designed to achieve high performance and optimal memory utilization.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>The tool and its documentation are available at: https:\/\/sagc-bioinformatics.github.io\/mgikit\/.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btae554","type":"journal-article","created":{"date-parts":[[2024,9,10]],"date-time":"2024-09-10T09:32:02Z","timestamp":1725960722000},"source":"Crossref","is-referenced-by-count":1,"title":["mgikit: demultiplexing toolkit for MGI fastq files"],"prefix":"10.1093","volume":"40","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-4032-5331","authenticated-orcid":false,"given":"Ziad","family":"Al Bkhetan","sequence":"first","affiliation":[{"name":"South Australian Genomics Centre, SAHMRI , Adelaide, SA, 5001,","place":["Australia"]},{"name":"Australian BioCommons, The University of Melbourne , Melbourne, VIC, 3010,","place":["Australia"]}]},{"ORCID":"https:\/\/orcid.org\/0009-0008-7180-7473","authenticated-orcid":false,"given":"Sen","family":"Wang","sequence":"additional","affiliation":[{"name":"South Australian Genomics Centre, SAHMRI , Adelaide, SA, 5001,","place":["Australia"]}]}],"member":"286","published-online":{"date-parts":[[2024,9,11]]},"reference":[{"key":"2024092706312350700_btae554-B1","doi-asserted-by":"crossref","first-page":"3047","DOI":"10.1093\/bioinformatics\/btw354","article-title":"Multiqc: summarize analysis results for multiple tools and samples in a single report","volume":"32","author":"Ewels","year":"2016","journal-title":"Bioinformatics"},{"key":"2024092706312350700_btae554-B2","doi-asserted-by":"crossref","first-page":"713","DOI":"10.1007\/s13258-021-01096-x","article-title":"Comparison between mgi and illumina sequencing platforms for whole genome sequencing","volume":"43","author":"Jeon","year":"2021","journal-title":"Genes Genomics"},{"key":"2024092706312350700_btae554-B3","doi-asserted-by":"crossref","first-page":"giab014","DOI":"10.1093\/gigascience\/giab014","article-title":"Comparative analysis of 7 short-read sequencing platforms using the Korean reference genome: Mgi and illumina sequencing benchmark for whole-genome sequencing","volume":"10","author":"Kim","year":"2021","journal-title":"Gigascience"},{"key":"2024092706312350700_btae554-B4","doi-asserted-by":"crossref","first-page":"3924","DOI":"10.1093\/bioinformatics\/bty432","article-title":"Axe: rapid, competitive sequence read demultiplexing using a trie","volume":"34","author":"Murray","year":"2018","journal-title":"Bioinformatics"},{"key":"2024092706312350700_btae554-B5","doi-asserted-by":"crossref","first-page":"770","DOI":"10.1093\/bioinformatics\/btu719","article-title":"deml: robust demultiplexing of illumina sequences using a likelihood-based 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