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However, computational analysis often requires command-line proficiency and high-performance computing resources. To lower these barriers, we developed Metabuli App, an all-in-one desktop application that efficiently runs taxonomic profiling locally on a consumer-grade computer. It features user-friendly graphical interfaces for custom database curation, raw read quality control (QC), taxonomic profiling, and interactive result visualization.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>GPLv3-licensed source code and prebuilt apps for Windows, macOS, and Linux are available at https:\/\/github.com\/steineggerlab\/Metabuli-App and are archived at https:\/\/doi.org\/10.5281\/zenodo.15876171. Analysis scripts are available at https:\/\/github.com\/jaebeom-kim\/metabuli-app-analysis. The Sankey-based taxonomy visualization component is available at https:\/\/github.com\/steineggerlab\/taxoview for easy integration into other web projects.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaf557","type":"journal-article","created":{"date-parts":[[2025,10,10]],"date-time":"2025-10-10T12:01:20Z","timestamp":1760097680000},"source":"Crossref","is-referenced-by-count":6,"title":["Easy and interactive taxonomic profiling with Metabuli App"],"prefix":"10.1093","volume":"41","author":[{"ORCID":"https:\/\/orcid.org\/0009-0009-3782-3477","authenticated-orcid":false,"given":"SunJae","family":"Lee","sequence":"first","affiliation":[{"name":"Seoul National University Department of Computer Science and Engineering, , Seoul 08826,","place":["South Korea"]},{"name":"Seoul National University School of Biological Sciences, , Seoul 08826,","place":["South Korea"]},{"name":"College of Liberal Studies, Seoul National University , Seoul 08826,","place":["South Korea"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0009-0000-9961-8836","authenticated-orcid":false,"given":"Jaebeom","family":"Kim","sequence":"additional","affiliation":[{"name":"Seoul National University School of Biological Sciences, , Seoul 08826,","place":["South Korea"]},{"name":"Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08826,","place":["South Korea"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8637-6719","authenticated-orcid":false,"given":"Milot","family":"Mirdita","sequence":"additional","affiliation":[{"name":"Seoul National University School of Biological Sciences, , Seoul 08826,","place":["South Korea"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-7798-427X","authenticated-orcid":false,"given":"Cameron L M","family":"Gilchrist","sequence":"additional","affiliation":[{"name":"Seoul National University School of Biological Sciences, , Seoul 08826,","place":["South Korea"]},{"name":"Ochang Center, Korea Basic Science Institute , Cheongju 28119,","place":["South Korea"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"ORCID":"https:\/\/orcid.org\/0000-0001-8781-9753","authenticated-orcid":false,"given":"Martin","family":"Steinegger","sequence":"additional","affiliation":[{"name":"Seoul National University School of Biological Sciences, , Seoul 08826,","place":["South Korea"]},{"name":"Interdisciplinary Program in Bioinformatics, Seoul National University , Seoul 08826,","place":["South Korea"]},{"name":"Institute of Molecular Biology and Genetics, Seoul National University , Seoul 08826,","place":["South Korea"]},{"name":"Artificial Intelligence Institute, Seoul National University , Seoul 08826,","place":["South Korea"]}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2025,10,13]]},"reference":[{"key":"2025103011081210100_btaf557-B1","author":"Axtmann","year":"2020"},{"key":"2025103011081210100_btaf557-B2","doi-asserted-by":"crossref","first-page":"637","DOI":"10.1038\/s41586-023-06510-w","article-title":"Clustering predicted structures at the scale of the known protein universe","volume":"622","author":"Barrio-Hernandez","year":"2023","journal-title":"Nature"},{"key":"2025103011081210100_btaf557-B3","doi-asserted-by":"crossref","first-page":"2301","DOI":"10.1109\/TVCG.2011.185","article-title":"D3 data-driven documents","volume":"17","author":"Bostock","year":"2011","journal-title":"IEEE Trans Vis Comput Graph"},{"key":"2025103011081210100_btaf557-B4","doi-asserted-by":"crossref","first-page":"1303","DOI":"10.1093\/bioinformatics\/btz715","article-title":"Pavian: interactive analysis of metagenomics data for microbiome studies and pathogen identification","volume":"36","author":"Breitwieser","year":"2020","journal-title":"Bioinformatics"},{"key":"2025103011081210100_btaf557-B5","doi-asserted-by":"crossref","first-page":"e107","DOI":"10.1002\/imt2.107","article-title":"Ultrafast one-pass FASTQ data preprocessing, quality control, and deduplication using fastp","volume":"2","author":"Chen","year":"2023","journal-title":"iMeta"},{"key":"2025103011081210100_btaf557-B6","author":"Douglas","year":"2019"},{"key":"2025103011081210100_btaf557-B7","unstructured":"Edwards R. \u00a0linsalrob\/fasta_validator: Initial Release (v0.1). 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