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COCOMAPS 2.0 complements the residue-level and buried surface area analyses of the original COCOMAPS tool with a comprehensive and accurate atomic-level characterization of the interface, enabling detailed interpretation of molecular recognition. Furthermore, it provides a greatly enhanced flexibility, interactivity, and efficiency in graphical visualizations.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>COCOMAPS 2.0 is accessible as a public web tool at https:\/\/aocdweb.com\/BioTools\/cocomaps2 and as a standalone code at https:\/\/doi.org\/10.5281\/zenodo.17390665.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btaf606","type":"journal-article","created":{"date-parts":[[2025,12,1]],"date-time":"2025-12-01T12:32:30Z","timestamp":1764592350000},"source":"Crossref","is-referenced-by-count":4,"title":["<i>COCOMAPS<\/i>\n                    2.0: a web server for identifying, analyzing, and visualizing atomic interactions at the interface of biomolecular complexes"],"prefix":"10.1093","volume":"41","author":[{"ORCID":"https:\/\/orcid.org\/0000-0002-3332-3055","authenticated-orcid":false,"given":"Mohit","family":"Chawla","sequence":"first","affiliation":[{"name":"Physical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900,","place":["Saudi Arabia"]}]},{"given":"Utkarsh","family":"Kalra","sequence":"additional","affiliation":[{"name":"Physical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900,","place":["Saudi Arabia"]}]},{"given":"Andrea","family":"Petta","sequence":"additional","affiliation":[{"name":"Tagetik Software S.R.L , Lucca 55100,","place":["Italy"]}]},{"given":"Suraj","family":"Sharma","sequence":"additional","affiliation":[{"name":"Department of Research and Innovation, STEMskills Research and Education Lab Private Limited , Faridabad 121002, Haryana,","place":["India"]}]},{"given":"Abdul Rajjak","family":"Shaikh","sequence":"additional","affiliation":[{"name":"Department of Sciences and Technologies, University \u201cParthenope\u201d of Naples , Naples 80143,","place":["Italy"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-1398-338X","authenticated-orcid":false,"given":"Luigi","family":"Cavallo","sequence":"additional","affiliation":[{"name":"Physical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST) , Thuwal 23955-6900,","place":["Saudi Arabia"]}]},{"ORCID":"https:\/\/orcid.org\/0000-0002-6156-6249","authenticated-orcid":false,"given":"Romina","family":"Oliva","sequence":"additional","affiliation":[{"name":"Department of Sciences and Technologies, University \u201cParthenope\u201d of Naples , Naples 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