{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,23]],"date-time":"2026-05-23T19:04:54Z","timestamp":1779563094450,"version":"3.53.1"},"reference-count":30,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2026,5,14]],"date-time":"2026-05-14T00:00:00Z","timestamp":1778716800000},"content-version":"vor","delay-in-days":13,"URL":"https:\/\/creativecommons.org\/licenses\/by\/4.0\/"}],"funder":[{"name":"Fight Kids Cancer and St Baldrick\u2019s Foundation Arceci Innovation Award to JJW"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2026,5,3]]},"abstract":"<jats:title>Abstract<\/jats:title>\n                  <jats:sec>\n                    <jats:title>Summary<\/jats:title>\n                    <jats:p>In the analysis of diverse omics data, a common and important preliminary step involves computing low-dimensional embeddings using techniques such as PCA, UMAP, t-SNE, or variational autoencoders. These embeddings provide a global overview of sample distributions and their relationships, often serving as the basis for formulating biological hypotheses. To facilitate rapid and intuitive exploration of such low-dimensional embeddings, we developed Yomix, an interactive omics-agnostic visualization and data exploration tool. Yomix enables users to flexibly define subsets of interest using a lasso selection tool, instantly compute their feature signatures, and compare their distributions. Yomix is a fast and efficient tool for interactive exploration of diverse omics datasets.<\/jats:p>\n                  <\/jats:sec>\n                  <jats:sec>\n                    <jats:title>Availability and implementation<\/jats:title>\n                    <jats:p>Yomix and its documentation are publicly available at https:\/\/github.com\/perrin-isir\/yomix.<\/jats:p>\n                  <\/jats:sec>","DOI":"10.1093\/bioinformatics\/btag301","type":"journal-article","created":{"date-parts":[[2026,5,8]],"date-time":"2026-05-08T11:49:37Z","timestamp":1778240977000},"source":"Crossref","is-referenced-by-count":0,"title":["Yomix: an interactive tool for the exploration of low-dimensional embeddings in omics data"],"prefix":"10.1093","volume":"42","author":[{"given":"Nicolas","family":"Perrin-Gilbert","sequence":"first","affiliation":[{"name":"Sorbonne Universit\u00e9, CNRS, Institut des Syst\u00e8mes Intelligents et de Robotique (ISIR) , Paris, F-75005,","place":["France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nisma","family":"Amjad","sequence":"additional","affiliation":[{"name":"Sorbonne Universit\u00e9, CNRS, Institut des Syst\u00e8mes Intelligents et de Robotique (ISIR) , Paris, F-75005,","place":["France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Pierre","family":"Fumeron","sequence":"additional","affiliation":[{"name":"Inserm U1330, Institut Curie Centre de Recherche, PSL University , Paris,","place":["France"]},{"name":"Translational Research Department, Institut Curie Centre de Recherche, PSL University , Paris,","place":["France"]}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Silvia","family":"Tulli","sequence":"additional","affiliation":[{"name":"Sorbonne Universit\u00e9, CNRS, Institut des Syst\u00e8mes Intelligents et de Robotique (ISIR) , Paris, 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