{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,29]],"date-time":"2026-04-29T11:33:44Z","timestamp":1777462424723,"version":"3.51.4"},"reference-count":0,"publisher":"Oxford University Press (OUP)","issue":"3","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2003,2,12]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We have developed a program for automatic identification of domains in protein three-dimensional structures. Performance of the program was assessed by three different benchmarks: (i) by comparison with the expert-curated SCOP database of structural domains; (ii) by comparison with a collection of manual domain assignments; and (iii) by comparison with a set of 55 proteins, frequently used as a benchmark for automatic domain assignment. In all these benchmarks PDP identified domains correctly in more than 80% of proteins.<\/jats:p>\n               <jats:p>Availability: http:\/\/123d.ncifcrf.gov\/<\/jats:p>\n               <jats:p>Contact: nicka@ceres-inc.comshindyal@sdsc.edu<\/jats:p>\n               <jats:p>* To whom correspondence should be addressed.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btg006","type":"journal-article","created":{"date-parts":[[2003,2,12]],"date-time":"2003-02-12T19:58:00Z","timestamp":1045079880000},"page":"429-430","source":"Crossref","is-referenced-by-count":134,"title":["PDP: protein domain parser"],"prefix":"10.1093","volume":"19","author":[{"given":"Nickolai","family":"Alexandrov","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ilya","family":"Shindyalov","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2003,2,12]]},"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/19\/3\/429\/48903820\/bioinformatics_19_3_429.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/19\/3\/429\/48903820\/bioinformatics_19_3_429.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T15:45:01Z","timestamp":1674661501000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/19\/3\/429\/258369"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2003,2,12]]},"references-count":0,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2003,2,12]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btg006","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2003,2,12]]},"published":{"date-parts":[[2003,2,12]]}}}