{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,19]],"date-time":"2025-03-19T11:18:24Z","timestamp":1742383104803},"reference-count":0,"publisher":"Oxford University Press (OUP)","issue":"3","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2003,2,12]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We have developed two programs that speed up common bioinformatic applications by spreading them across a UNIX cluster.(1) BLAST.pm, a new module for the \u2018MOLLUSC\u2019 package. (2) WRAPID, a simple tool for parallelizing large numbers of small instances of programs such as BLAST, FASTA and CLUSTALW.<\/jats:p>\n               <jats:p>Availability: The packages were developed in Perl on a 20-node Linux cluster and are provided together with a configuration script and documentation. They can be freely downloaded from http:\/\/wolfe.gen.tcd.ie\/wrapper<\/jats:p>\n               <jats:p>Contact: daniel_r_caffrey@cambridge.pfizer.comkarsten@oscar.gen.tcd.ie<\/jats:p>\n               <jats:p>* These authors contributed equally to this work.<\/jats:p>\n               <jats:p>\u2020 Current Address: Pfizer Discovery Technology Center, 620 Memorial Drive, Cambridge, MA 02139, USA.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btg007","type":"journal-article","created":{"date-parts":[[2003,2,12]],"date-time":"2003-02-12T19:58:00Z","timestamp":1045079880000},"page":"441-442","source":"Crossref","is-referenced-by-count":19,"title":["Wrapping up BLAST and other applications for use on Unix clusters"],"prefix":"10.1093","volume":"19","author":[{"given":"Karsten","family":"Hokamp","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Denis C.","family":"Shields","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kenneth H.","family":"Wolfe","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniel R.","family":"Caffrey","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2003,2,12]]},"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/19\/3\/441\/48903832\/bioinformatics_19_3_441.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/19\/3\/441\/48903832\/bioinformatics_19_3_441.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T15:43:50Z","timestamp":1674661430000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/19\/3\/441\/258392"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2003,2,12]]},"references-count":0,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2003,2,12]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btg007","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2003,2,12]]},"published":{"date-parts":[[2003,2,12]]}}}