{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,3]],"date-time":"2024-08-03T13:19:37Z","timestamp":1722691177502},"reference-count":0,"publisher":"Oxford University Press (OUP)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2003,5,22]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Zerg is a library of sub-routines that parses the output from all NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn and Tblastx) and returns the attributes of a BLAST report to the user. It is optimized for speed, being especially useful for large-scale genomic analysis. Benchmark tests show that Zerg is over two orders of magnitude faster than some widely used BLAST parsers.<\/jats:p>\n               <jats:p>Availability: http:\/\/bioinfo.iq.usp.br\/zerg<\/jats:p>\n               <jats:p>Contact: verjo@iq.usp.br<\/jats:p>\n               <jats:p>* To whom correspondence should be addressed.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btg122","type":"journal-article","created":{"date-parts":[[2003,5,21]],"date-time":"2003-05-21T17:52:52Z","timestamp":1053539572000},"page":"1035-1036","source":"Crossref","is-referenced-by-count":13,"title":["Zerg: a very fast BLAST parser library"],"prefix":"10.1093","volume":"19","author":[{"given":"Apu\u00e3 C.M.","family":"Paquola","sequence":"first","affiliation":[{"name":"Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo 05508-900, S\u00e3o Paulo, SP, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Abimael A.","family":"Machado","sequence":"additional","affiliation":[{"name":"Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo 05508-900, S\u00e3o Paulo, SP, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Eduardo M.","family":"Reis","sequence":"additional","affiliation":[{"name":"Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo 05508-900, S\u00e3o Paulo, SP, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Aline M.","family":"da Silva","sequence":"additional","affiliation":[{"name":"Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo 05508-900, S\u00e3o Paulo, SP, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sergio","family":"Verjovski-Almeida","sequence":"additional","affiliation":[{"name":"Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo 05508-900, S\u00e3o Paulo, SP, Brazil"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2003,5,22]]},"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/19\/8\/1035\/48904313\/bioinformatics_19_8_1035.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/19\/8\/1035\/48904313\/bioinformatics_19_8_1035.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T16:54:15Z","timestamp":1674665655000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/19\/8\/1035\/235371"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2003,5,22]]},"references-count":0,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2003,5,22]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btg122","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2003,5,22]]},"published":{"date-parts":[[2003,5,22]]}}}