{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,30]],"date-time":"2025-10-30T06:50:28Z","timestamp":1761807028242},"reference-count":0,"publisher":"Oxford University Press (OUP)","issue":"2","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2004,1,22]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Java-Dotter (JDotter) is a platform-independent Java interactive interface for the Linux version of Dotter, a widely used program for generating dotplots of large DNA or protein sequences. JDotter runs as a client\u2013server application and can send new sequences to the Dotter program for alignment as well as rapidly access a repository of preprocessed dotplots. JDotter also interfaces with a sequence database or file system to display supplementary feature data. Thus, JDotter greatly simplifies access to dotplot data in laboratories that deal with large numbers of genomes and have a multi-platform organization.<\/jats:p>\n               <jats:p>Availability: Currently, JDotter is used via Java Web Start by the Poxvirus Bioinformatics Resource for examining dotplots of complete poxvirus genomes; http:\/\/athena.bioc.uvic.ca\/pbr\/jdotter\/. The software is available for download from the same location.<\/jats:p>\n               <jats:p>Supplementary information: Installation instructions, the User's Manual, screenshots and examples are available at the JDotter home page http:\/\/athena.bioc.uvic.ca\/pbr\/jdotter\/. The software and source code is free for non-commercial applications.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btg406","type":"journal-article","created":{"date-parts":[[2004,1,20]],"date-time":"2004-01-20T21:07:58Z","timestamp":1074632878000},"page":"279-281","source":"Crossref","is-referenced-by-count":92,"title":["JDotter: a Java interface to multiple dotplots generated by dotter"],"prefix":"10.1093","volume":"20","author":[{"given":"Ryan","family":"Brodie","sequence":"first","affiliation":[]},{"given":"Rachel L.","family":"Roper","sequence":"additional","affiliation":[]},{"given":"Chris","family":"Upton","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2004,1,22]]},"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/20\/2\/279\/48905137\/bioinformatics_20_2_279.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/20\/2\/279\/48905137\/bioinformatics_20_2_279.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T18:47:03Z","timestamp":1674672423000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/20\/2\/279\/204948"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,1,22]]},"references-count":0,"journal-issue":{"issue":"2","published-print":{"date-parts":[[2004,1,22]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btg406","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2004,1,22]]},"published":{"date-parts":[[2004,1,22]]}}}