{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,18]],"date-time":"2025-10-18T10:16:29Z","timestamp":1760782589596},"reference-count":0,"publisher":"Oxford University Press (OUP)","issue":"3","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2004,2,12]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: \u00a0LDDist is a Perl module implemented in C++ that allows the user to calculate LogDet pair-wise genetic distances for amino acid as well as nucleotide sequence data. It can handle site-to-site rate variation by treating a proportion of the sites as invariant and\/or by assigning sites to different, presumably homogenous, rate categories. The rate-class assignments and invariant proportion can be set explicitly, or estimated by the program; the latter using either of two different capture\u2013recapture methods. The assignment to rate categories in lieu of a phylogeny can be done using Shannon\u2013Wiener index as a crude token for relative rate.<\/jats:p>\n               <jats:p>Availability: \u00a0LDDist and its companion Perl script PLD are freely available at http:\/\/artedi.ebc.uu.se\/molev\/software\/LDDist.html<\/jats:p>","DOI":"10.1093\/bioinformatics\/btg422","type":"journal-article","created":{"date-parts":[[2004,2,11]],"date-time":"2004-02-11T16:52:44Z","timestamp":1076518364000},"page":"416-418","source":"Crossref","is-referenced-by-count":30,"title":["LDDist: a Perl module for calculating LogDet pair-wise distances for protein and nucleotide sequences"],"prefix":"10.1093","volume":"20","author":[{"given":"Mikael","family":"Thollesson","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2004,1,22]]},"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/20\/3\/416\/48905143\/bioinformatics_20_3_416.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/20\/3\/416\/48905143\/bioinformatics_20_3_416.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T18:20:30Z","timestamp":1674670830000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/20\/3\/416\/186246"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,1,22]]},"references-count":0,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2004,2,12]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btg422","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2004,2,12]]},"published":{"date-parts":[[2004,1,22]]}}}