{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,8]],"date-time":"2025-10-08T16:17:49Z","timestamp":1759940269096},"reference-count":0,"publisher":"Oxford University Press (OUP)","issue":"10","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2004,7,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: OBIYagns (yet another gene network simulator) is a biochemical system simulator that comprises a multiple-user Web-based graphical interface, an ordinary differential equation solver and a parameter estimators distributed over an open bioinformatics grid (OBIGrid). This grid-based biochemical simulation system can achieve high performance and provide a secure simulation environment for estimating kinetic parameters in an acceptable time period. OBIYagns can be applied to larger system biology-oriented simulation projects.<\/jats:p>\n               <jats:p>Availability: OBIYagns example models, methods and user guide are available at https:\/\/access.obigrid.org\/yagns\/<\/jats:p>\n               <jats:p>Supplementary information: Please refer to Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bth122","type":"journal-article","created":{"date-parts":[[2004,3,2]],"date-time":"2004-03-02T21:41:06Z","timestamp":1078263666000},"page":"1646-1648","source":"Crossref","is-referenced-by-count":13,"title":["OBIYagns: a grid-based biochemical simulator with a parameter estimator"],"prefix":"10.1093","volume":"20","author":[{"given":"Shuhei","family":"Kimura","sequence":"first","affiliation":[]},{"given":"Takuji","family":"Kawasaki","sequence":"additional","affiliation":[]},{"given":"Mariko","family":"Hatakeyama","sequence":"additional","affiliation":[]},{"given":"Takashi","family":"Naka","sequence":"additional","affiliation":[]},{"given":"Fumikazu","family":"Konishi","sequence":"additional","affiliation":[]},{"given":"Akihiko","family":"Konagaya","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2004,2,12]]},"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/20\/10\/1646\/48905984\/bioinformatics_20_10_1646.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/20\/10\/1646\/48905984\/bioinformatics_20_10_1646.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T16:47:49Z","timestamp":1674665269000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/20\/10\/1646\/237194"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,2,12]]},"references-count":0,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2004,7,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bth122","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2004,7,1]]},"published":{"date-parts":[[2004,2,12]]}}}