{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,10,17]],"date-time":"2023-10-17T07:59:52Z","timestamp":1697529592288},"reference-count":0,"publisher":"Oxford University Press (OUP)","issue":"17","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2004,11,22]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Absence of any regular structure is increasingly being observed in structural studies of proteins. These disordered regions or random coils, which have been observed under physiological conditions, are indicators of protein plasticity. The wide variety of interactions possible due to the flexibility of these \u2018natively disordered\u2019 regions confers functional advantage to the protein and the organism in general. This concept is underscored by the increasing proportion of intrinsically unstructured proteins seen with the ascension in the complexity of the organisms.<\/jats:p>\n               <jats:p>The \u2018natively unfolded\/disordered\u2019 state of the protein can be predicted utilizing Uversky's or Dunker's algorithm. We utilized Uversky's prediction scheme and based on the unique position of a protein in the charge\u2013hydrophobicity plot, a derived net score was used to predict the overall disorder of the human housekeeping and non-housekeeping proteins. Substantial numbers of proteins in both the classes were predicted to be unfolded. However, comparative genomic analysis of predicted unfolded Homo sapiens proteins with homologues in Caenorhabditis elegans, Drosophila melanogaster and Mus musculus revealed significant increase in unfoldedness in non-housekeeping proteins in comparison with housekeeping proteins. Our analysis in the evolutionary context suggests addition or substitution of amino acid residues which favour unfoldedness in non-housekeeping proteins compared to housekeeping proteins.<\/jats:p>\n               <jats:p>Supplementary information: \u00a0http:\/\/www.igib.res.in\/data\/pda\/proteindisorderanalysis.html<\/jats:p>","DOI":"10.1093\/bioinformatics\/bth344","type":"journal-article","created":{"date-parts":[[2004,6,8]],"date-time":"2004-06-08T01:01:45Z","timestamp":1086656505000},"page":"2904-2910","source":"Crossref","is-referenced-by-count":15,"title":["Comparative analysis of protein unfoldedness in human housekeeping and non-housekeeping proteins"],"prefix":"10.1093","volume":"20","author":[{"given":"Neeraj","family":"Pandey","sequence":"first","affiliation":[{"name":"Institute of Genomics and Integrative Biology (CSIR), Delhi University Campus, Mall Road, Delhi 110 007, India"}]},{"given":"Mythily","family":"Ganapathi","sequence":"additional","affiliation":[{"name":"Institute of Genomics and Integrative Biology (CSIR), Delhi University Campus, Mall Road, Delhi 110 007, India"}]},{"given":"Kaushal","family":"Kumar","sequence":"additional","affiliation":[{"name":"Institute of Genomics and Integrative Biology (CSIR), Delhi University Campus, Mall Road, Delhi 110 007, India"}]},{"given":"Dipayan","family":"Dasgupta","sequence":"additional","affiliation":[{"name":"Institute of Genomics and Integrative Biology (CSIR), Delhi University Campus, Mall Road, Delhi 110 007, India"}]},{"given":"Sushanta Kumar","family":"Das Sutar","sequence":"additional","affiliation":[{"name":"Institute of Genomics and Integrative Biology (CSIR), Delhi University Campus, Mall Road, Delhi 110 007, India"}]},{"given":"Debasis","family":"Dash","sequence":"additional","affiliation":[{"name":"Institute of Genomics and Integrative Biology (CSIR), Delhi University Campus, Mall Road, Delhi 110 007, India"}]}],"member":"286","published-online":{"date-parts":[[2004,6,4]]},"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/20\/17\/2904\/48906461\/bioinformatics_20_17_2904.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/20\/17\/2904\/48906461\/bioinformatics_20_17_2904.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T15:58:34Z","timestamp":1674662314000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/20\/17\/2904\/186043"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,6,4]]},"references-count":0,"journal-issue":{"issue":"17","published-print":{"date-parts":[[2004,11,22]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bth344","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2004,11,22]]},"published":{"date-parts":[[2004,6,4]]}}}