{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,10]],"date-time":"2026-03-10T15:54:11Z","timestamp":1773158051886,"version":"3.50.1"},"reference-count":0,"publisher":"Oxford University Press (OUP)","issue":"17","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2004,11,22]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The Dual Organellar GenoMe Annotator (DOGMA) automates the annotation of organellar (plant chloroplast and animal mitochondrial) genomes. It is a Web-based package that allows the use of BLAST searches against a custom database, and conservation of basepairing in the secondary structure of animal mitochondrial tRNAs to identify and annotate genes. DOGMA provides a graphical user interface for viewing and editing annotations. Annotations are stored on our password-protected server to enable repeated sessions of working on the same genome. Finished annotations can be extracted for direct submission to GenBank.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/phylocluster.biosci.utexas.edu\/dogma\/<\/jats:p>\n               <jats:p>Supplementary information: Detailed documentation and tutorials for annotating both animal mitochondrial and plant chloroplast genomes can be found on the DOGMA home page.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bth352","type":"journal-article","created":{"date-parts":[[2004,6,8]],"date-time":"2004-06-08T01:01:45Z","timestamp":1086656505000},"page":"3252-3255","source":"Crossref","is-referenced-by-count":2696,"title":["Automatic annotation of organellar genomes with DOGMA"],"prefix":"10.1093","volume":"20","author":[{"given":"Stacia K.","family":"Wyman","sequence":"first","affiliation":[]},{"given":"Robert K.","family":"Jansen","sequence":"additional","affiliation":[]},{"given":"Jeffrey L.","family":"Boore","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2004,6,4]]},"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/20\/17\/3252\/48906413\/bioinformatics_20_17_3252.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/20\/17\/3252\/48906413\/bioinformatics_20_17_3252.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T16:15:56Z","timestamp":1674663356000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/20\/17\/3252\/186263"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,6,4]]},"references-count":0,"journal-issue":{"issue":"17","published-print":{"date-parts":[[2004,11,22]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bth352","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2004,11,22]]},"published":{"date-parts":[[2004,6,4]]}}}