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Our system is a major advance over previous work because (1) the system can be installed as an R package, (2) the system uses Java to instantiate the GO structure and the SJava system to integrate R and Java and (3) the system is also deployed as a publicly available web tool.<\/jats:p><jats:p>Availability: Our software is academically available through http:\/\/franklin.imgen.bcm.tmc.edu\/OntologyTraverser\/. Both the R package and the web tool are accessible.<\/jats:p><jats:p>Contact: \u00a0cashaw@bcm.tmc.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/bth495","type":"journal-article","created":{"date-parts":[[2004,8,28]],"date-time":"2004-08-28T01:15:02Z","timestamp":1093655702000},"page":"275-276","source":"Crossref","is-referenced-by-count":32,"title":["OntologyTraverser: an R package for GO analysis"],"prefix":"10.1093","volume":"21","author":[{"given":"A.","family":"Young","sequence":"first","affiliation":[{"name":"Baylor College of Medicine, Department of Molecular and Human Genetics Houston, TX, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"N.","family":"Whitehouse","sequence":"additional","affiliation":[{"name":"Baylor College of Medicine, Department of Molecular and Human Genetics Houston, TX, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"J.","family":"Cho","sequence":"additional","affiliation":[{"name":"Baylor College of Medicine, Department of Molecular and Human Genetics Houston, TX, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"C.","family":"Shaw","sequence":"additional","affiliation":[{"name":"Baylor College of Medicine, Department of Molecular and Human Genetics Houston, TX, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2004,8,27]]},"reference":[{"key":"2023013107192872600_B1","doi-asserted-by":"crossref","unstructured":"Al-Shahrour, F., Diaz-Uriarte, R., Dopazo, J. 2004FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes. 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