{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,2,1]],"date-time":"2024-02-01T18:24:52Z","timestamp":1706811892939},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"3","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005,2,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Class\u2013responsibility\u2013collaboration (CRC) cards have been used extensively in the software industry for defining complex object-oriented software requirements. We have adapted this tool to capture information about biological components, collaborators and responsibilities within these collaborations, which is not captured by current annotation tools. CRC cards should provide a common ground that will facilitate communication between biologist and computer scientists.<\/jats:p>\n               <jats:p>Availability: A CRC card template, XML representation and XML schema are freely available at http:\/\/people.musc.edu\/~zhengw\/CRCCard\/CRC_Card_Index.html<\/jats:p>\n               <jats:p>Contact: \u00a0zhengw@musc.edu<\/jats:p>\n               <jats:p>Supplementary information: Supplemental Figures 1\u20134.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bti005","type":"journal-article","created":{"date-parts":[[2004,9,8]],"date-time":"2004-09-08T01:32:51Z","timestamp":1094607171000},"page":"415-417","source":"Crossref","is-referenced-by-count":2,"title":["Capturing biological information with class\u2013responsibility\u2013collaboration cards"],"prefix":"10.1093","volume":"21","author":[{"given":"Daniel","family":"Shegogue","sequence":"first","affiliation":[]},{"given":"W. Jim","family":"Zheng","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2004,9,7]]},"reference":[{"key":"2023051306074138700_B1","doi-asserted-by":"crossref","unstructured":"Chen, J., Fujii, K., Zhang, L., Roberts, T., Fu, H. 2001Raf-1 promotes cell survival by antagonizing apoptosis signal-regulating kinase 1 through a MEK-ERK independent mechanism. Proc. Natl Acad. Sci. USA987783\u20137788","DOI":"10.1073\/pnas.141224398"},{"key":"2023051306074138700_B2","unstructured":"Chong, H., Vikis, H.G., Guan, K.L. 2003Mechanisms of regulating the Raf kinase family. Cell Signal15463\u2013469"},{"key":"2023051306074138700_B3","doi-asserted-by":"crossref","unstructured":"Colombini, M., Blachly-Dyson, E., Forte, M. 1996VDAC, a channel in the outer mitochondrial membrane. Ion Channels4169\u2013202","DOI":"10.1007\/978-1-4899-1775-1_5"},{"key":"2023051306074138700_B4","doi-asserted-by":"crossref","unstructured":"Galaktionov, K., Jessus, C., Beach, D. 1995Raf1 interaction with Cdc25 phosphatase ties mitogenic signal transduction to cell cycle activation. Genes Dev.91046\u20131058","DOI":"10.1101\/gad.9.9.1046"},{"key":"2023051306074138700_B5","unstructured":"Jamal, S. and Ziff, E.B. 1995Raf phosphorylates p53 in vitro and potentiates p53-dependent transcriptional transactivation in vivo               . Oncogene102095\u20132101"},{"key":"2023051306074138700_B6","unstructured":"Li, S., Armstrong, C.M., Bertin, N., Ge, H., Milstein, S., Boxem, M., Vidalain, P.O., Han, J.D., Chesneau, A., Hao, T., et al. 2004A map of the interactome network of the metazoan C.elegans               . Science303540\u2013543"},{"key":"2023051306074138700_B7","doi-asserted-by":"crossref","unstructured":"Lin, J.H., Makris, A., McMahon, C., Bear, S.E., Patriotis, C., Prasad, V.R., Brent, R., Golemis, E.A., Tsichlis, P.N. 1999The ankyrin repeat-containing adaptor protein Tvl-1 is a novel substrate and regulator of Raf-1. J. Biol. Chem.27414706\u201314715","DOI":"10.1074\/jbc.274.21.14706"},{"key":"2023051306074138700_B8","unstructured":"Perkel, J. 2004Validating the interactome. Scientist1818\u201322"},{"key":"2023051306074138700_B9","doi-asserted-by":"crossref","unstructured":"Rebhan, M., Chalifa-Caspi, V., Prilusky, J., Lancet, D. 1998GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support. Bioinformatics14656\u2013664","DOI":"10.1093\/bioinformatics\/14.8.656"},{"key":"2023051306074138700_B10","doi-asserted-by":"crossref","unstructured":"Wang, S., Ghosh, R.N., Chellappan, S.P. 1998Raf-1 physically interacts with Rb and regulates its function: a link between mitogenic signaling and cell cycle regulation. Mol. Cell. Biol.187487\u20137498","DOI":"10.1128\/MCB.18.12.7487"},{"key":"2023051306074138700_B11","unstructured":"Wilkinson, N.M. Using CRC Cards: An Informal Approach to Object-Oriented Development1998, Cambridge  Cambridge University Press,  pp. 252"},{"key":"2023051306074138700_B12","doi-asserted-by":"crossref","unstructured":"Wu, X., Noh, S.J., Zhou, G., Dixon, J.E., Guan, K.L. 1996Selective activation of MEK1 but not MEK2 by A-Raf from epidermal growth factor-stimulated Hela cells. J. Biol. Chem.2713265\u20133271","DOI":"10.1074\/jbc.271.6.3265"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/3\/415\/50305609\/bioinformatics_21_3_415.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/3\/415\/50305609\/bioinformatics_21_3_415.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,5,13]],"date-time":"2023-05-13T06:07:54Z","timestamp":1683958074000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/21\/3\/415\/237744"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,9,7]]},"references-count":12,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2005,2,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bti005","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2005,2,1]]},"published":{"date-parts":[[2004,9,7]]}}}