{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,6,6]],"date-time":"2024-06-06T22:36:16Z","timestamp":1717713376055},"reference-count":3,"publisher":"Oxford University Press (OUP)","issue":"5","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005,3,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: ESTminer is a Web application and database schema for interactive mining of expressed sequence tag (EST) contig and cluster datasets. The Web interface contains a query frame that allows the selection of contigs\/clusters with specific cDNA library makeup or a threshold number of members. The results are displayed as color-coded tree nodes, where the color indicates the fractional size of each cDNA library component. The nodes are expandable, revealing library statistics as well as EST or contig members, with links to sequence data, GenBank records or user configurable links. Also, the interface allows \u2018queries within queries\u2019 where the result set of a query is further filtered by the subsequent query.<\/jats:p>\n               <jats:p>Availability: ESTminer is implemented in Java\/JSP and the package, including MySQL and Oracle schema creation scripts, is available from http:\/\/cggc.agtec.uga.edu\/Data\/download.asp<\/jats:p>\n               <jats:p>Contact: \u00a0agingle@uga.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/bti030","type":"journal-article","created":{"date-parts":[[2004,9,17]],"date-time":"2004-09-17T00:13:37Z","timestamp":1095380017000},"page":"669-670","source":"Crossref","is-referenced-by-count":4,"title":["ESTminer: a Web interface for mining EST contig and cluster databases"],"prefix":"10.1093","volume":"21","author":[{"given":"Yecheng","family":"Huang","sequence":"first","affiliation":[]},{"given":"Janie","family":"Pumphrey","sequence":"additional","affiliation":[]},{"given":"Alan R.","family":"Gingle","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2004,9,16]]},"reference":[{"key":"2023013107212920500_B1","unstructured":"Christoffels, A., van Gelder, A., Greyling, G., Miller, R., Hide, T., Hide, W. 2001STACK: Sequence Tag Alignment and Consensus Knowledgebase. Nucleic Acids Res.29234\u2013238"},{"key":"2023013107212920500_B2","doi-asserted-by":"crossref","unstructured":"Quackenbush, J., Cho, J., Lee, D., Liang, F., Holt, I., Karamycheva, S., Parvizi, B., Pertea, G., Sultana, R., White, J. 2001The TIGR Gene Indices: analysis of gene transcript sequences in highly sampled eukaryotic species. Nucleic Acids Res.29159\u2013164","DOI":"10.1093\/nar\/29.1.159"},{"key":"2023013107212920500_B3","unstructured":"Wheeler, D.L., Church, D.M., Federhen, S., Lash, A.E., Madden, T.L., Pontius, J.U., Schuler, G.D., Schrimi, L.M., Sequeira, E., Tatusova, T.A., Wagner, L. 2003Database resources of the National Center for Biotechnology. Nucleic Acids Res.3128\u201333"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/5\/669\/48962461\/bioinformatics_21_5_669.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/5\/669\/48962461\/bioinformatics_21_5_669.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T09:45:58Z","timestamp":1675158358000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/21\/5\/669\/219877"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,9,16]]},"references-count":3,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2005,3,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bti030","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2005,3,1]]},"published":{"date-parts":[[2004,9,16]]}}}