{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,30]],"date-time":"2026-05-30T03:00:19Z","timestamp":1780110019686,"version":"3.54.0"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"4","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005,2,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: arrayMagic is a software package for quality control and preprocessing of two-colour cDNA microarray data. The automated analysis pipeline comprises data import, normalization, replica merging, quality diagnostics and data export. The script-based processing combines reproducibility and flexibility at high-throughput and provides quality-assured and preprocessed microarray data to high-level follow-up analysis.<\/jats:p>\n               <jats:p>Availability: The R package arrayMagic is available with BSD license at http:\/\/www.bioconductor.org<\/jats:p>\n               <jats:p>Contact: \u00a0a.buness@dkfz.de<\/jats:p>\n               <jats:p>Supplementary information: The package contains documentation in the form of manual pages and a vignette with a guided tour of a typical workflow.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bti052","type":"journal-article","created":{"date-parts":[[2004,9,29]],"date-time":"2004-09-29T01:27:46Z","timestamp":1096421266000},"page":"554-556","source":"Crossref","is-referenced-by-count":40,"title":["arrayMagic: two-colour cDNA microarray quality control and preprocessing"],"prefix":"10.1093","volume":"21","author":[{"given":"Andreas","family":"Buness","sequence":"first","affiliation":[{"name":"Department of Molecular Genome Analysis, German Cancer Research Center INF 580, Heidelberg, 69120, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wolfgang","family":"Huber","sequence":"additional","affiliation":[{"name":"Department of Molecular Genome Analysis, German Cancer Research Center INF 580, Heidelberg, 69120, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Klaus","family":"Steiner","sequence":"additional","affiliation":[{"name":"Department of Molecular Genome Analysis, German Cancer Research Center INF 580, Heidelberg, 69120, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Holger","family":"S\u00fcltmann","sequence":"additional","affiliation":[{"name":"Department of Molecular Genome Analysis, German Cancer Research Center INF 580, Heidelberg, 69120, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Annemarie","family":"Poustka","sequence":"additional","affiliation":[{"name":"Department of Molecular Genome Analysis, German Cancer Research Center INF 580, Heidelberg, 69120, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2004,9,28]]},"reference":[{"key":"2023013107234705300_B1","doi-asserted-by":"crossref","unstructured":"Bolstad, B.M., Irizarry, R.A., Astrand, M., Speed, T.P. 2003A comparison of normalization methods for high density oligonucleotide array data based on bias and variance. Bioinformatics19185\u2013193","DOI":"10.1093\/bioinformatics\/19.2.185"},{"key":"2023013107234705300_B2","unstructured":"Gentleman, R. 2004Reproducible research: a bioinformatics case study. Stat. Appl. Genet. Mol. Biol.3"},{"key":"2023013107234705300_B3","unstructured":"Gentleman, R., Carey, V.J., Bates, D.J., Bolstad, B.M., Dettling, M., Dudoit, S., Ellis, B., Gautier, L., Ge, Y., Gentry, J., et al. Bioconductor: open software development for computational biology and bioinformatics.  Bioconductor Project Working Papers. Working Paper 1"},{"key":"2023013107234705300_B4","doi-asserted-by":"crossref","unstructured":"Huber, W., von Heydebreck, A., S\u00fcltmann, H., Poustka, A., Vingron, M. 2002Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics18(Suppl. 1),S96\u2013S104","DOI":"10.1093\/bioinformatics\/18.suppl_1.S96"},{"key":"2023013107234705300_B5","unstructured":"Ihaka, R. and Gentleman, R. 1996R: a language for data analysis and graphics. J. Comput. Graph. Statist5299\u2013314"},{"key":"2023013107234705300_B6","doi-asserted-by":"crossref","unstructured":"Yang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J., Speed, T.P. 2002Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res.30e15","DOI":"10.1093\/nar\/30.4.e15"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/4\/554\/48965089\/bioinformatics_21_4_554.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/4\/554\/48965089\/bioinformatics_21_4_554.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T09:54:43Z","timestamp":1675158883000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/21\/4\/554\/203447"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,9,28]]},"references-count":6,"journal-issue":{"issue":"4","published-print":{"date-parts":[[2005,2,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bti052","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2005,2,15]]},"published":{"date-parts":[[2004,9,28]]}}}