{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,9]],"date-time":"2026-03-09T17:30:54Z","timestamp":1773077454618,"version":"3.50.1"},"reference-count":14,"publisher":"Oxford University Press (OUP)","issue":"7","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The Protein Data Bank (PDB) has recently released versions of the PDB Exchange dictionary and the PDB archival data files in XML format collectively named PDBML. The automated generation of these XML files is driven by the data dictionary infrastructure in use at the PDB. The correspondences between the PDB dictionary and the XML schema metadata are described as well as the XML representations of PDB dictionaries and data files.<\/jats:p>\n               <jats:p>Availability: The current software translated XML schema file is located at http:\/\/deposit.pdb.org\/pdbML\/pdbx-v1.000.xsd, and on the PDB mmCIF resource page at http:\/\/deposit.pdb.org\/mmcif\/. PDBML files are stored on the PDB beta ftp site at ftp:\/\/beta.rcsb.org\/pub\/pdb\/uniformity\/data\/XML<\/jats:p>\n               <jats:p>Contact: \u00a0jwest@rcsb.rutgers.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/bti082","type":"journal-article","created":{"date-parts":[[2004,10,28]],"date-time":"2004-10-28T00:23:01Z","timestamp":1098922981000},"page":"988-992","source":"Crossref","is-referenced-by-count":127,"title":["PDBML: the representation of archival macromolecular structure data in XML"],"prefix":"10.1093","volume":"21","author":[{"given":"John","family":"Westbrook","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nobutoshi","family":"Ito","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Haruki","family":"Nakamura","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kim","family":"Henrick","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Helen M.","family":"Berman","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2004,10,27]]},"reference":[{"key":"2023013107271691800_B1","unstructured":"Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N., Bourne, P.E. 2000The Protein Data Bank. Nucleic Acids Res.28235\u2013242"},{"key":"2023013107271691800_B2","doi-asserted-by":"crossref","unstructured":"Berman, H.M., Henrick, K., Nakamura, H. 2003Announcing the worldwide Protein Data Bank. Nat. Struct. Biol.10980","DOI":"10.1038\/nsb1203-980"},{"key":"2023013107271691800_B3","doi-asserted-by":"crossref","unstructured":"Bernstein, F.C., Koetzle, T.F., Williams, G.J.B., Meyer, E.F., Jr., Brice, M.D., Rodgers, J.R., Kennard, O., Shimanouchi, T., Tasumi, M. 1977Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol.112535\u2013542","DOI":"10.1016\/S0022-2836(77)80200-3"},{"key":"2023013107271691800_B4","doi-asserted-by":"crossref","unstructured":"Bourne, P.E., Berman, H.M., Watenpaugh, K., Westbrook, J.D., Fitzgerald, P.M.D. 1997The macromolecular Crystallographic Information File (mmCIF). Meth. 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In Hall, S.R. and McMahon, B. (Eds.). International Tables for Crystallography , Dordrecht  (in press) Kluwer Academic Publishers"},{"key":"2023013107271691800_B12","unstructured":"World Wide Web Consortium.  (Ed.). XML Schema Part 0: Primer, W3C Recommendation2001http:\/\/www.w3.org\/TR\/2001\/REC-xmlschema-2000-20010502\/"},{"key":"2023013107271691800_B13","unstructured":"World Wide Web Consortium.  (Eds.). XML Schema Part 1: Structures W3C Recommendation2001 W3C. http:\/\/www.w3.org\/TR\/2001\/REC-xmlschema-2001-20010502\/"},{"key":"2023013107271691800_B14","unstructured":"World Wide Web Consortium.  (Eds.). XML Schema Part 2: Datatypes W3C Recommendation2001 W3C pp. http:\/\/www.w3.org\/TR\/xmlschema-2\/"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/7\/988\/48967252\/bioinformatics_21_7_988.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/7\/988\/48967252\/bioinformatics_21_7_988.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T10:27:36Z","timestamp":1675160856000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/21\/7\/988\/268819"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,10,27]]},"references-count":14,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2005,4,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bti082","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2005,4,1]]},"published":{"date-parts":[[2004,10,27]]}}}