{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,11]],"date-time":"2026-04-11T11:59:28Z","timestamp":1775908768763,"version":"3.50.1"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"6","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005,3,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: PDZBase is a database that aims to contain all known PDZ-domain-mediated protein\u2013protein interactions. Currently, PDZBase contains approximately 300 such interactions, which have been manually extracted from &amp;gt;200 articles. The database can be queried through both sequence motif and keyword-based searches, and the sequences of interacting proteins can be visually inspected through alignments (for the comparison of several interactions), or as residue-based diagrams including schematic secondary structure information (for individual complexes).<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/icb.med.cornell.edu\/services\/pdz\/start.<\/jats:p>\n               <jats:p>Contact: \u00a0pdzbase@med.cornell.edu.<\/jats:p>","DOI":"10.1093\/bioinformatics\/bti098","type":"journal-article","created":{"date-parts":[[2004,10,29]],"date-time":"2004-10-29T00:51:45Z","timestamp":1099011105000},"page":"827-828","source":"Crossref","is-referenced-by-count":159,"title":["PDZBase: a protein\u2013protein interaction database for PDZ-domains"],"prefix":"10.1093","volume":"21","author":[{"given":"Thijs","family":"Beuming","sequence":"first","affiliation":[]},{"given":"Lucy","family":"Skrabanek","sequence":"additional","affiliation":[]},{"given":"Masha Y.","family":"Niv","sequence":"additional","affiliation":[]},{"given":"Piali","family":"Mukherjee","sequence":"additional","affiliation":[]},{"given":"Harel","family":"Weinstein","sequence":"additional","affiliation":[]}],"member":"286","published-online":{"date-parts":[[2004,10,28]]},"reference":[{"key":"2023013107224203900_B1","doi-asserted-by":"crossref","unstructured":"Boeckmann, B., Bairoch, A., Apweiler, R., Blatter, M.C., Estreicher, A., Gasteiger, E., Martin, M.J., Michoud, K., O'Donovan, C., Phan, I., Pilbout, S., Schneider, M. 2003The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res.31365\u2013370","DOI":"10.1093\/nar\/gkg095"},{"key":"2023013107224203900_B2","doi-asserted-by":"crossref","unstructured":"Campagne, F., Bettler, E., Vriend, G., Weinstein, H. 2003Batch mode generation of residue-based diagrams of proteins. Bioinformatics191854\u20131855","DOI":"10.1093\/bioinformatics\/btg236"},{"key":"2023013107224203900_B3","doi-asserted-by":"crossref","unstructured":"Dueber, J.E., Yeh, B.J., Chak, K., Lim, W.A. 2003Reprogramming control of an allosteric signaling switch through modular recombination. Science3011904\u20131908","DOI":"10.1126\/science.1085945"},{"key":"2023013107224203900_B4","unstructured":"Fan, J.S. and Zhang, M. 2002Signaling complex organization by PDZ domain proteins. Neurosignals11315\u2013321"},{"key":"2023013107224203900_B5","unstructured":"Hung, A.Y. and Sheng, M. 2002PDZ domains: structural modules for protein complex assembly. J. Biol. 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Rep.3069\u201382"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/6\/827\/48962541\/bioinformatics_21_6_827.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/6\/827\/48962541\/bioinformatics_21_6_827.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T09:52:27Z","timestamp":1675158747000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/21\/6\/827\/199577"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2004,10,28]]},"references-count":9,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2005,3,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bti098","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2005,3,15]]},"published":{"date-parts":[[2004,10,28]]}}}