{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,28]],"date-time":"2025-10-28T14:38:24Z","timestamp":1761662304007},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"24","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005,12,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Medusa is a Java application for visualizing and manipulating graphs of interaction, such as data from the STRING database. It features an intuitive user interface developed with the help of biologists. Medusa is optimized for accessing protein interaction data from STRING, but can be used for any type of graph from any scientific field.<\/jats:p>\n               <jats:p>Availability: Medusa, along with sample datasets and instructions, can be downloaded from<\/jats:p>\n               <jats:p>Contact: \u00a0hooper@embl.de<\/jats:p>","DOI":"10.1093\/bioinformatics\/bti696","type":"journal-article","created":{"date-parts":[[2005,9,28]],"date-time":"2005-09-28T03:23:31Z","timestamp":1127877811000},"page":"4432-4433","source":"Crossref","is-referenced-by-count":131,"title":["Medusa: a simple tool for interaction graph analysis"],"prefix":"10.1093","volume":"21","author":[{"given":"Sean D.","family":"Hooper","sequence":"first","affiliation":[{"name":"European Molecular Biology Laboratory 1 \u00a0 1 \u00a0 \u00a0 Heidelberg, Germany"}]},{"given":"Peer","family":"Bork","sequence":"additional","affiliation":[{"name":"European Molecular Biology Laboratory 1 \u00a0 1 \u00a0 \u00a0 Heidelberg, Germany"},{"name":"Max Delbr\u00fcck Center for Molecular Medicine 2 \u00a0 2 \u00a0 \u00a0 Berlin-Buch, Germany"}]}],"member":"286","published-online":{"date-parts":[[2005,9,27]]},"reference":[{"key":"2023061007325257500_b1","doi-asserted-by":"crossref","first-page":"1455","DOI":"10.1093\/bioinformatics\/bth080","article-title":"CNplot: visualizing pre-clustered networks","volume":"20","author":"Batada","year":"2004","journal-title":"Bioinformatics"},{"key":"2023061007325257500_b2","first-page":"47","article-title":"Pajek\u2014program for large network analysis","volume":"2","author":"Batagelj","year":"1998","journal-title":"Connections"},{"key":"2023061007325257500_b3","doi-asserted-by":"crossref","first-page":"R22","DOI":"10.1186\/gb-2003-4-3-r22","article-title":"Osprey: a network visualization system","volume":"4","author":"Breitkreutz","year":"2003","journal-title":"Genome Biol."},{"key":"2023061007325257500_b4","doi-asserted-by":"crossref","first-page":"724","DOI":"10.1126\/science.1105103","article-title":"Dynamic complex formation during the yeast cell cycle","volume":"307","author":"de Lichtenberg","year":"2005","journal-title":"Science"},{"key":"2023061007325257500_b5","doi-asserted-by":"crossref","first-page":"272","DOI":"10.1093\/bioinformatics\/bth494","article-title":"ProViz: protein interaction visualization and exploration","volume":"21","author":"Iragne","year":"2005","journal-title":"Bioinformatics"},{"key":"2023061007325257500_b6","doi-asserted-by":"crossref","first-page":"e134","DOI":"10.1371\/journal.pbio.0030134","article-title":"Systematic association of genes to phenotypes by genome and literature mining","volume":"3","author":"Korbel","year":"2005","journal-title":"PLoS Biol."},{"key":"2023061007325257500_b7","doi-asserted-by":"crossref","first-page":"1399","DOI":"10.1093\/nar\/gki285","article-title":"metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella","volume":"33","author":"Pinney","year":"2005","journal-title":"Nucleic Acids Res."},{"key":"2023061007325257500_b8","doi-asserted-by":"crossref","first-page":"2498","DOI":"10.1101\/gr.1239303","article-title":"Cytoscape: a software environment for integrated models of biomolecular interaction networks","volume":"13","author":"Shannon","year":"2003","journal-title":"Genome Res."},{"issue":"Database Issue","key":"2023061007325257500_b9","doi-asserted-by":"crossref","first-page":"D433","DOI":"10.1093\/nar\/gki005","article-title":"STRING: known and predicted protein\u2013protein associations, integrated and transferred across organisms","volume":"33","author":"von Mering","year":"2005","journal-title":"Nucleic Acids Res."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/24\/4432\/50566138\/bioinformatics_21_24_4432.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/24\/4432\/50566138\/bioinformatics_21_24_4432.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,6,10]],"date-time":"2023-06-10T07:33:03Z","timestamp":1686382383000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/21\/24\/4432\/179694"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2005,9,27]]},"references-count":9,"journal-issue":{"issue":"24","published-print":{"date-parts":[[2005,12,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bti696","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2005,12,15]]},"published":{"date-parts":[[2005,9,27]]}}}