{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,29]],"date-time":"2026-03-29T11:56:13Z","timestamp":1774785373767,"version":"3.50.1"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"23","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2005,12,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Alternative translational initiation is an important cellular mechanism contributing to the diversity of protein products and functions. We develop a database that provides a comprehensive collection of alternative translational initiation events. The purpose of this alternative translational initiation database (ATID) is to facilitate the systematic study of alternative translational initiation of genes. The current version of database contains 300 genes from Homo sapiens, Mus musculus and other species. Each of the genes has two or more isoforms due to alternative translational initiation. Resources in ATID, including gene information, alternative products of genes and domain structures of isoforms, are provided through a user-friendly web interface.<\/jats:p>\n               <jats:p>Availability: The ATID database is available for public use at<\/jats:p>\n               <jats:p>Contact: \u00a0caijun99@mails.tsinghua.edu.cn<\/jats:p>\n               <jats:p>Supplementary information: Supplementary instructions about this database and further statistical analyses can be found on the web page ()<\/jats:p>","DOI":"10.1093\/bioinformatics\/bti704","type":"journal-article","created":{"date-parts":[[2005,10,11]],"date-time":"2005-10-11T00:23:46Z","timestamp":1128990226000},"page":"4312-4314","source":"Crossref","is-referenced-by-count":4,"title":["ATID: a web-oriented database for collection of publicly available alternative translational initiation events"],"prefix":"10.1093","volume":"21","author":[{"given":"Jun","family":"Cai","sequence":"first","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jing","family":"Zhang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ying","family":"Huang","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yanda","family":"Li","sequence":"additional","affiliation":[],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2005,10,10]]},"reference":[{"key":"2023061010033212800_b1","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"2023061010033212800_b2","doi-asserted-by":"crossref","first-page":"45","DOI":"10.1093\/nar\/28.1.45","article-title":"The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000","volume":"28","author":"Bairoch","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"2023061010033212800_b3","doi-asserted-by":"crossref","first-page":"276","DOI":"10.1093\/nar\/30.1.276","article-title":"The Pfam protein families database","volume":"30","author":"Bateman","year":"2002","journal-title":"Nucleic Acids Res."},{"key":"2023061010033212800_b4","doi-asserted-by":"crossref","first-page":"445","DOI":"10.1093\/bioinformatics\/btg443","article-title":"Translational polymorphism as a potential source of plant proteins variety in Arabidopsis thaliana","volume":"20","author":"Kochetov","year":"2004","journal-title":"Bioinformatics"},{"key":"2023061010033212800_b5","doi-asserted-by":"crossref","first-page":"491","DOI":"10.1007\/s00438-005-1152-7","article-title":"The role of alternative translation start sites in the generation of human protein diversity","volume":"273","author":"Kochetov","year":"2005","journal-title":"Mol. Genet. Genomics"},{"key":"2023061010033212800_b6","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1016\/S0378-1119(02)01056-9","article-title":"Pushing the limits of the scanning mechanism for initiation of translation","volume":"299","author":"Kozak","year":"2002","journal-title":"Gene"},{"key":"2023061010033212800_b7","first-page":"4363","article-title":"Two isoforms of murine hck, generated by utilization of alternative translational initiation codons, exhibit different patterns of subcellular localization","volume":"11","author":"Lock","year":"1991","journal-title":"Mol. Cell. Biol."},{"key":"2023061010033212800_b8","doi-asserted-by":"crossref","first-page":"11643","DOI":"10.1074\/jbc.273.19.11643","article-title":"An alternative domain determines nuclear localization in multifunctional protein 4.1","volume":"273","author":"Luque","year":"1998","journal-title":"J. Biol. Chem."},{"key":"2023061010033212800_b9","doi-asserted-by":"crossref","first-page":"5733","DOI":"10.1074\/jbc.275.8.5733","article-title":"P76MDM2 inhibits the ability of p90MDM2 to destabilize p53","volume":"275","author":"Perry","year":"2000","journal-title":"J. Biol. Chem."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/23\/4312\/50567339\/bioinformatics_21_23_4312.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/21\/23\/4312\/50567339\/bioinformatics_21_23_4312.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,6,10]],"date-time":"2023-06-10T10:04:10Z","timestamp":1686391450000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/21\/23\/4312\/195339"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2005,10,10]]},"references-count":9,"journal-issue":{"issue":"23","published-print":{"date-parts":[[2005,12,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bti704","relation":{},"ISSN":["1367-4803","1367-4811"],"issn-type":[{"value":"1367-4803","type":"print"},{"value":"1367-4811","type":"electronic"}],"subject":[],"published-other":{"date-parts":[[2005,12]]},"published":{"date-parts":[[2005,10,10]]}}}