{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,19]],"date-time":"2025-03-19T11:54:09Z","timestamp":1742385249790},"reference-count":2,"publisher":"Oxford University Press (OUP)","issue":"1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The OligoFaktory is a set of tools for the design, on an arbitrary number of target sequences, of high-quality long oligonucleotide for micro-array, of primer pair for PCR, of siRNA and more. The user-centered interface exists in two flavours: a web portal and a standalone software for Mac OS X Tiger. A unified presentation of results provides overviews with distribution charts and relative location bar graphs, as well as detailed features for each oligonucleotide. Input and output files conform to a common XML interchange file format to allow both automatic generation of input data, archiving, and post-processing of results. The design pipeline can use BLAST servers to evaluate specificity of selected oligonucleotides.<\/jats:p>\n               <jats:p>Availability: The web portal ; the software for Macintosh:<\/jats:p>\n               <jats:p>Contact: \u00a0cschrett@ulb.ac.be<\/jats:p>","DOI":"10.1093\/bioinformatics\/bti728","type":"journal-article","created":{"date-parts":[[2005,10,26]],"date-time":"2005-10-26T07:23:23Z","timestamp":1130311403000},"page":"115-116","source":"Crossref","is-referenced-by-count":17,"title":["O<scp>ligo<\/scp>F<scp>aktory<\/scp>: a visual tool for interactive oligonucleotide design"],"prefix":"10.1093","volume":"22","author":[{"given":"Colas","family":"Schretter","sequence":"first","affiliation":[{"name":"Unit of Evolutionary Genetics (UEG), Institute of Molecular Biology and Medicine (IBMM), Free University of Brussels (ULB) \u00a0 Gosselies, Belgium"}]},{"given":"Michel C.","family":"Milinkovitch","sequence":"additional","affiliation":[{"name":"Unit of Evolutionary Genetics (UEG), Institute of Molecular Biology and Medicine (IBMM), Free University of Brussels (ULB) \u00a0 Gosselies, Belgium"}]}],"member":"286","published-online":{"date-parts":[[2005,10,20]]},"reference":[{"key":"2023012408312627300_b1","doi-asserted-by":"crossref","first-page":"326","DOI":"10.1038\/nbt936","article-title":"Rational siRNA design for RNA interference","volume":"22","author":"Reynolds","year":"2004","journal-title":"Nat. Biotechnol"},{"key":"2023012408312627300_b2","article-title":"Oligonucleotide design by multilevel optimization","volume-title":"Technical Report, Unit of Evolutionary Genetics","author":"Schretter","year":"2005"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/1\/115\/48838964\/bioinformatics_22_1_115.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/1\/115\/48838964\/bioinformatics_22_1_115.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,24]],"date-time":"2023-01-24T08:34:49Z","timestamp":1674549289000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/22\/1\/115\/218169"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2005,10,20]]},"references-count":2,"journal-issue":{"issue":"1","published-print":{"date-parts":[[2006,1,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/bti728","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2006,1,1]]},"published":{"date-parts":[[2005,10,20]]}}}